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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttgtctccatgtgtgtgtatatatatgagaagagatcaaatttacaccggtataactttgacaattattataccattctataatttttcaact...

Basic information

species Glycine max
transcript GLYMA04G26840.1
intron # 7
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g48920.1 (Oryza sativa), 5'ss of exon 7
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttgtctccatgtgtgtgtatatatatgagaagagatcaaatttacaccggtataactttgacaatta--ttataccattctataatttttcaact---
|||||||||||||||||||||||||| ||||| || |||   || ||| | ||||| |||   || || |||   || || ||| |||||||||      ||| |   ||  ||| |||   |  | |   |||  |    |  ||   ||||| ||  |  |   |    |||    ||  ||||||   
GTTGAATGGGATGAGATAAATGCTGCTTGGGGTCAGGCTGCTCTTCTTTTGCATACCATGGCTCAGTACTTCACCCCAAAATTTGAgtatccttga----catattgatgactatttattttactacaattaatccat-tggtcattcttttgagaaggaattcccattgatcttcccttcatcaactagt

upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttgtctccatgtgtgtgtatatatatgagaagagatcaaatttacaccggtataactttgacaattattataccattctataatttttcaact-----
|| || |||||||||||||||||||| |||||||| |||   || ||  | ||||| |||   || || |||   || || ||| |||||||||| |      |||    ||| | |   | |    ||    |   ||      | |       ||||  || |      |    |   ||||||     
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttataca---gtgacattatttttgctacagtttatttgctggtcattctcttgaga--agtaattcatacatggcatttacctccatcaactagtta

upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G61710.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttgtctccatgt----gtgtgtatatatatgagaagagatcaaatttacaccggta--taactttgacaattattataccattctataatttttcaact
||||| ||||||||||| |||||||| ||||||||||| || || || || ||||| |||||  | |||||||| || ||||||||||||||||  |  | || |    ||   | |   |||   |     |    || |  | | |   |   | |||   ||||  |       ||     ||| ||  
GTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAgtatcctt-ataactatctcacagtccttttccttattttaccctttttgtttgattctgttgactgtatatgaagtttatccttgaccagtaaccccttttaag-

upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 7
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttgtctccatgtg-tgtgtatatatatgagaagagatcaaatttacaccggtataactttgacaattattataccattctataatttttcaact
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||   |||||||||||||| ||||| |||||||||||||    |         | | |  |||  | |   |||| |  | |   ||  || |     | | | |     ||   | |||  | ||| |
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTTCTTCTCCATACAATGGTTCAATATTTCCGACCAAAGTTCCAgtatcctttgtagtgaaacaacacatgtttgaatgt-atgttttcaattaaatatttgtgaaaatagtcaattcagttctaaatagaagaatcatccaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813717|gb|BI785992.1|BI785992
EST:     GCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCA                         ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC
genomic: GCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC
EST: gi|22931617|gb|BU548756.1|BU548756
EST:     GCTTGNNTNNNNCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCA                         ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC
genomic: GCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC