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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGgtattatttccttggtcttttgttgcaggttttcagttcattgtttcttccatgaaacaatatttttggtgttatatcaagtactgtattgtaggaatac...

Basic information

species Glycine max
transcript GLYMA04G15970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G15970.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g43870.1 (Oryza sativa), 5'ss of exon 6
CCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGgtattatttccttggtcttttgttgcaggttttcagttcattgtttcttccatgaaacaatatttttggtgttatatcaagtactgtattgtaggaatac
 || || ||||| |  |     ||  |  |||     |||||| ||||| |||||||| ||||||||||||||||    ||| | ||||| |||||| |||||  ||  | ||   |   |  || |  |  |   |              |||   | || | | | ||  || |   ||   ||  |  ||| |||| 
TCGTGAGTCATGTATATTCTCTGAGGGTTGCTATACAAAGGATCTGACAATTCTTGGAGTTGACCTGGCAAAAGTTGTAATAGTTGACAATACTCCACAGgtagcatgcctttttccgaatactgtatatgctttatatggacagatggaaatgtttccatttctatagttctagacttagacttggttgctagaaatat

upper sequence: GLYMA04G15970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0175g00210.t01 (Vitis vinifera), 5'ss of exon 4
CCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGgtattatttccttggtcttttgttgcaggttttcagttca-ttgtttcttccatgaaacaatatttttggtgttatatcaagtactgtattgtaggaatac
  | ||||||||||  |    |||| |  ||| |   || ||| |||||||| | |||||||||||||||||||||  |||||| || ||  ||||| |||||||  |      || |||| ||     |||||  || | |          ||       | |  ||  |  ||| ||   || | |||  |   | |  
TAGGGAATCATGCATATTTTCAGATGGTAGCTACACTAAAGATCTGACAGTTTTAGGAATTGACCTGGCAAAAGTAGCCATAATAGATAATTCTCCACAGgtatttctcatgcagtattttctttttttttttctttttaatcagaagcagtattttcttttttagtttctaatatttctgctatt-tatcatgtcatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519764|gb|BM188806.1|BM188806
EST:     TTCTTGGAATTGACCTGGCAAAAGTATGCATAATCTACAACACTCCAGAG                         GTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGAC
genomic: TTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGgtattatttc ... catgacacagGTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGAC