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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTgtaagtttctctatccttgtgctaagtttacgtgggtcttgtttactcaatgaaattacctcttttatataagtttctgatgttctttgctgcatcatat...

Basic information

species Glycine max
transcript GLYMA04G14770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTgtaagtttctctatccttgtgctaagtttacgtgggtcttgtttact--caatgaaattacctcttt-tatataagtttctgatgttctt-tgctgcatcatat
|||||  |||| |||||| |||| ||||||||||||||| | ||||| || |||||||||||||||||||||||||||||  || ||  | |  |   |   | |   | | |  |  |  ||||    | |  |  || | || | |      |  | |   |  || ||     
GTTGACCTGCGAAGAGCAAATAACTGTGAAATAATGCTCACGAAAATAAAGATTCCTTTGCCAGATATGCTTgtaagttttgctttcagtatcttttctgctcatcattttggcattgtaacaatactgtgaagtggttgtttagagggaataaacatacaagttttggatt----

upper sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 7
GTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTgtaagtttctctatccttgtgctaagtttacgtgggtcttgtttactcaatgaaattacctcttttatataagtttctgatgttctttgctgcatcatat---
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GTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTTgtaagctcatccttcccttttctcg---tatggtgttgctaggtataatgtaaaattgaaagttttagttgaaatcaatttgctttttggtcttctttgattt