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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAAgtatgctctctgtttctctttctcttgcctttttgtctttgtataattcttaaatttgttgcataaagtttctgtaattgttcttgaaatgtaaacaggg...

Basic information

species Glycine max
transcript GLYMA04G12490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G12490.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0015g01740.t01 (Vitis vinifera), 5'ss of exon 7
GCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAAgtatgctctctgtttctctttctcttgcctttttgtctttgtataattctta------aatttgttgcataaagtttctgtaattgttcttgaaatgtaaacaggg
|| ||  ||||| ||||||| ||||| | |||||| ||||| ||||||||||| ||||| ||   ||| ||||| |||||||||| | | |     ||| | ||   | | || |  |  ||||| ||||  ||      |  ||||||||  | | |    || | |  ||  |  |  ||      
GCAACCTTAGCTTTGTATGCAGCAAAGCAAACTTCAGGAATTGTTGTTAATATTGGTTTCCACTGCACATCTATTGTTCCAAgtaagatattccggtctttgtcctatac-ttatcataattgtaaaattgatatgaaaaaccttgttgcagcatgctggaatagtgggcctcaagctccaac-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400877|gb|BM177659.1|BM177659
EST:     TTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAA                         TTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGG
genomic: TTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAAgtatgctctc ... cttttctcagTTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGG