Sequence
atgc intronic sequence ATGC exonic sequenceACATCAAATGTATATTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaatataatcttcaggcttcagctaatatttcatatgatctatttctgcagtgccactgactttacattcatttcccaaatttccag
Basic information
species | Glycine max |
transcript | GLYMA04G12450.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G12450.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 5'ss of exon 8
ACATCAAATGTATATTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaatataatcttcaggcttcagctaatatttcatatgatctatttctgcagtgccactgactttacattcatttcccaaatttccag
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GCACAGAATGTACATTGTAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATGCAAAGACCATTGCAAAGATACACg-------tacagctttcag------cctagttttctatttggtcaactattgccatgt---gtagttttcttatctctgtcaa---tgcag
upper sequence: GLYMA04G12450.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 7
ACATCAAATGTATATTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaatataatcttcaggcttcagctaatatttcatatgatctatttctgcagtgccactgactttacattcatttcccaaatttccag
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ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagtta--ctttatgcct-aaatatgattttgcatttttttattcagtatta--actggctctatgttcatttggttaatttcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207765276|gb|GD737649.1|GD737649EST: GGCCTGCTGCACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAG ATTCTTGATTCTAAGTCTTTATATAAATTACTGGAAGTCATCGACTCTAG
genomic: GGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaata ... aaatttccagATTCTTGATTCTAAGTCTTTATATAAATTACTGGAAGTCATTGACTCTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATCAAATGTATATTGTCAATGCTGGTTCTGGCTTTAAGAAGATGCTTTGGCCTGCCACACAGAAGTTTCTTGATTCCAAAACCATTGCGAAGATACAGgtgaagaatataatcttcaggcttcagctaatatttcatatgatctatttctgcagtgccactgactttacattcatttcccaaatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA