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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttgacacactaccttgtgaaaatttataagtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttacttaatatga...

Basic information

species Glycine max
transcript GLYMA04G09130.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttgac-----acactaccttgtgaaaatttataagtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttact-taatatga-------------------------------------------
|| |||||| | ||||| || || |||||||||||||||||| | ||||||||||| || || || || ||||| | | ||          | ||  ||       | |||      |  | ||||| ||  ||  | || | |      | || ||   ||  ||  | |  |                                               
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctgggttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag

upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtga-tttttgacacactaccttgtgaaaatttata-agtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttacttaatatga
|| |||||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||| | || ||||||| || || |||    |  | |  | |||  ||  |    ||  ||  ||  ||     |          |  | |      ||     | |   |    
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta--

upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtga-tttttgacacactaccttgtgaaaatttata-agtccttgtatgtagtagtgaaagtaaaaaaaacctaatga-------ataagctaatg-ttacttaatatga------
|| |||||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||| | || ||||||| || || |||    |  | |  | |||  ||  |    ||  ||  ||  ||     |          |  | |       || | | |  | |||||| | ||||      
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttga-atgatcacag

upper sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttgacacactaccttgtgaaaatttataagtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttacttaatatga----
||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||| ||   |       ||  | ||  || ||  | |    || | | |  | |      | |       ||  |  | | ||  ||   ||| ||  | |    
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgt-atacatacagttttatgtagtacaacttgctgaacatttat-tcttttgggattcattatttggttctg-tagacatgcctatac-actcaagctcatata