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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctttttttagtaattaatggtgctcaaagcttcgttttaagaaaacatgtataccaataatcctttggctgaagattaaccaga...

Basic information

species Glycine max
transcript GLYMA04G08510.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 6
GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctttttttagtaattaatggtgctcaaagcttcgttttaagaaaacatgtataccaataatcctttggc-tgaagattaaccaga---
|||||||| ||||| || ||||| || ||||| ||||||||||||||||||||| | | | ||  | ||    | |  || | ||  |       ||     | | |  |    | |  |||| |  ||| ||      |  | | |  |||   
GGAATTGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatgggctgtttgtactgaactga--aacttatattttctg--gcagaaatcttattactttttttcaccattcttccattaaagccattacttagtagagca

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 7
GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctttttttagtaattaatggtgctcaaagcttcgttttaagaaaacatgtataccaataatcctttggctgaagattaaccaga--
||||| || ||||| || ||||| || ||||| ||||||||||||||||||||| |  || ||  |  |    | |  || | ||  |       | | | | | ||   | | | |||      |  | |     | |  | ||        
GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatggattgtttgtattgaactga--aacttatattttctggtggtacttgtcaaagcaccttttattatttcagccatcaaaatcattactagttgagca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207703563|gb|GD686545.1|GD686545
EST:     GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATG
genomic: GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATG
EST: gi|26267892|gb|CA818955.1|CA818955
EST:     GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATG
genomic: GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATG
EST: gi|6481874|gb|AW201145.1|AW201145
EST:     GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCTATTTGTGTATGACATT
genomic: GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATT