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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATCTATTAACAGCAAGTGGAGCATACAAACATCGTCCTGATTTAACCCAACATAATTGCAGAACAGACAGGGCCAACCTCATTTCTTCTGCTCCATGgttggtacaaaaaagcatctgttaaaatagttttaaatgttataatcataattcaggcgcaggaagcaagcacttagagctgttgccaatgactcttgaacatgttgcctacag

Basic information

species Glycine max
transcript GLYMA04G06750.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06750.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 7
CACATCTATTAACAGCAAGTGGAGCATACAAACATCGTCCTGATTTAACCCAACATAATTGCAGAACAGACAGGGCCAACCTCATTTCTTCTGCTCCATGgttggtacaaaaa--agcatctgttaaaatagttttaaatgttataatcataattcaggcgcaggaagcaagcacttagagctgttgccaatgactcttgaacatgttgcctacag
||||||| || ||||| ||||| ||||||| ||||||||||||   |||||||||||| ||| |||| |||| |||||||||||| |||||||||||||||||||||  | ||  ||| ||  | ||  | || ||   ||    |||| ||||  |        |  ||  ||||||     |   | |||| || |   | |   |        
CACATCTCTTGACAGCCAGTGGTGCATACAGACATCGTCCTGAAACAACCCAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatcagaattagcttccatcaattttgtgtt---tgcctaaatc-taatata-----ctaatacacacacttaccatagacacaaatgcctataccaga-actat------