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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGTAGTGTTCTCTTTGGAGTCCTTGGCATGCCAATTGCAGCAGCTCTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattcttgctcattctctattctcacacgtaaatcaaggctcttgtttgctcctagcctctttaaaaagatacctattaaaccaacaagagttttat...

Basic information

species Glycine max
transcript GLYMA04G04810.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022754|gb|CX709495.1|CX709495
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
EST: gi|5510346|gb|AI856788.1|AI856788
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
EST: gi|209719952|gb|BW666035.1|BW666035
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
EST: gi|193352716|gb|FK317224.1|FK317224
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
EST: gi|58019747|gb|CX706489.1|CX706489
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
EST: gi|19453182|gb|BM954592.1|BM954592
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
EST: gi|6725926|gb|AW310325.1|AW310325
EST:     CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAG                         TTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA
genomic: CTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattctt ... gattatgcagTTAGCCAGGAAAATTCGTGGATGCCTATTATTTTGTTGGTGAAGACCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTGGTAGTGTTCTCTTTGGAGTCCTTGGCATGCCAATTGCAGCAGCTCTAAAGATGATCCCTGTGGGATCTGTCTAAAATCAGTGCAGACAAATTAGgtacattcttgctcattctctattctcacacgtaaatcaaggctcttgtttgctcctagcctctttaaaaagatacctattaaaccaacaagagttttat

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaga