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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACATTGTGGAGCTATGACAGAGTCCGTGGTTCGCAATTTCACACGACATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactttttatgaaaggaactaatttacctcattttatttctctaaatgatgacttgttatatctcatatcatatgcactatgtactgacatctga...

Basic information

species Glycine max
transcript GLYMA04G03870.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03870.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g11240.t01 (Vitis vinifera), 5'ss of exon 4
ATGAACATTGTGGAGCTATGACAGAGTCCGTGGTTCGCAATTTCACACGACATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactttttatgaaaggaactaatttacctcattttatttctcta--aatgatgacttgttatatctcatatcatatgcactatgt-actgacatctga
 ||| |||| |||||||||||||||    || ||||| |||||||| || |||||||||||||| ||||| ||||| ||  | || ||||| || ||||||||| |    | | |||   |||   |     || |||  | |||| |   ||  |  || |  | ||    || | |  |||| ||| | | |   ||   |
TTGATCATTTTGGAGCTATGACAGAAAATGTAGTTCGAAATTTCACCCGCCATATTCTCTCTGGGTTGGCTTACTTGCACAGCACAAAGACAATCCACAGgtaagagtcatgtttgattagaatggaaac-tctgattcaacttctttgtcaacaaccacctactgtagt--atgtaagctgcagtattttaatagtattata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403455|gb|EV273265.1|EV273265
EST:     CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG                         GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT