Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCCGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTCTGATAGATGAGgtataactgttctttgagttgatttcctttcttttgctggtattaccttactgtttatttgtgttactgtaaacaggccccttgattcatgtattacatt...

Basic information

species Glycine max
transcript GLYMA04G03710.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 7
TGAAGCCGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTCTGATAGATGAGgt-ataactgttctttgagttgatttcctttc--ttttgctggtattaccttactgtttatttgtgttactgtaaacaggccccttg-attcatgtatt-acatt------
|||||| |||||||||||||||||| | ||  |||||||||| || || ||||| |||||||| ||||| ||| | ||||| |||||  |  |||||||||| ||  || ||||   | |   | | ||||   || |  ||||||||    || ||| ||  |       ||    |     |||| ||  || | || |   |      
TGAAGCTGAGGCATTTTCTGAAAGGCTGAAGCGAGAGCTCCAAGCGCTTGAAGCGGCAAATGTACATGCAATTCTTGAAAGCGAACCATTAGTAGATGAGgttattccttttctgctaataattattctttggattatcttggtattag---acagttcatgggaagacaagtgtttaattttcttgtatatatatcttcatgcttttcag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAAGCCGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTCTGATAGATGAGgta-taactgttctttgagttgatttcctttcttttgctggtattaccttactgtttatttg-tgttactgtaaacaggccccttgattcatgtattacatt------------
|||||| |||||||||||||||||| | ||| ||||||| ||||| || ||||| |||||||| ||||| ||| | ||||| |||||  |  ||||||||||| |  || ||||   | ||  | | ||||   ||  |  | |||    || ||| ||  | ||  | ||| || |      |  ||  ||| || |  ||            
TGAAGCTGAGGCATTTTCTGAAAGGCTGAAACGAGAGCTTCAGGCGCTTGAAGCGGCAAATGTACATGCAATTCTGGAAAGCGAACCATTAGTAGATGAGgtaattccttttctgctaattattattctttggatta-tcttgttattagacagttcatgggatgcgagtgttaa-attttgttgtatatatg-atcatcttcatgcttttcag

upper sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 7
TGAAGCCGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTCTGATAGATGAGgtataactgttctttgagttgatttcctttcttttgctggtattaccttactgtttatttgtgttactgtaaacaggccccttgattcatgtat-tacatt
|||||| ||||| |||||||||||||| || ||||| || |  ||  |||||||||||||||||||||||||||| |||  ||||||  || | ||||||||| | || || ||  | | | || | ||  |   |    |||    |   | ||||| | | ||    |||          |   | || ||| || || 
TGAAGCTGAGGCCTTTTCTGAAAGGTTGAAGAGAGAACTTCTTGCCTTGGAAGCAGCAAATGTGCATGCCATTTTGGAATCTGAACCATTGGTCGATGAGgtaaaccttttgttccaatgggttacattcatgcggtgtttatggtttatttctttatctatatt-taataatttttttttgtttctgatatatatatata