1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaatttatcttttttccctgaaattctgtgtgatatgttctgccaggctccttcctcaattccctttgtttttattttttttccttttttgggg...
species | Glycine max |
transcript | GLYMA04G03290.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|193482421|gb|FK446176.1|FK446176
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|208330242|gb|GE129303.1|GE129303
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: TGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAAGGAG ATGATACAAGTCCCGGEST: gi|192334034|gb|FK026191.1|FK026191
genomic: TGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAA-GGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGG
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|58020362|gb|CX707104.1|CX707104
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGTTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|208175425|gb|GD976820.1|GD976820
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|19053017|gb|BM731684.1|BM731684
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|10237995|gb|BE806883.1|BE806883
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|208323938|gb|GE120101.1|GE120101
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CATTGGGTGCTAATGGGNGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|58016809|gb|CX703551.1|CX703551
genomic: CATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|209706385|gb|BW670788.1|BW670788
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|31462375|gb|CD404403.1|CD404403
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCTAACATGGAAAGGAG ATGATACTAGTCCCGGCCATTGGGGAAACTAAGGCAACCGATGCTACAGGAEST: gi|208169509|gb|GD971880.1|GD971880
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: GTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATAACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGEST: gi|10848246|gb|BF070781.1|BF070781
genomic: GTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGAT-ACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGG
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|22930015|gb|BU547154.1|BU547154
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGAEST: gi|12496252|gb|BG046971.1|BG046971
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
EST: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAG ATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
genomic: CTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaat ... tgcataccagATGATACAAGTCCCGGCCATTGGGGAAACAAAGGCAACCGATGCTACAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGATCCTATAGCTGCTGTAGAATTTCTTTCCAAATACTGCCAATGGGCTGTTGTAACATTGGGTGCTAATGGGTGCATTGCCAAACATGGAAAGGAGgtgtgttaatttatcttttttccctgaaattctgtgtgatatgttctgccaggctccttcctcaattccctttgtttttattttttttccttttttgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc