Sequence
atgc intronic sequence ATGC exonic sequenceAGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGgtatatttaattccataatcccatttaacttagttaaaagcttgatccgttgtagcaaattcctaggttaaggaatttttgtctttttatttttgtggag...
Basic information
species | Glycine max |
transcript | GLYMA04G03180.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 7
AGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGgtatatttaattccataatcccat--ttaacttagttaaaagcttgatccgttg-tagcaaattcctaggttaaggaatttttgtctttttatttttgtggag
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TGGACGCCGTTTCAGTGAGGGAACAAGTGCTGACCGTGAAATACAAAGAACACTGATGGAGTTACTTAATCAGCTTGATGGATTTGACCAGCTTGGGAAGgtatttcttggttcataactgagtccttagtgatggtggaaacaacatgcttaaatcacagttttttggtataaagaggatctttccaaacatgtctgta---
upper sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S47_46V6.2 (Physcomitrella patens), 5'ss of exon 7
AGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGgtatatttaattccataatcc-----------catttaacttagttaaaagcttgatccg-------ttgta---gcaaattcc---taggttaaggaatt-tttgtctttttatttttgtggag-----------
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AGGACGTAGGTTTAGCGAAGGTACAAGTGCAGATCGAGAGATTCAACGCACACTCATGGAGTTATTGAATCAACTTGATGGTTTTGATCAGCTTGGAAAGgtactcttgactcttgaaaccattctggtattcattggctttggcttttctgctgatctgcaagaagttgtatatatgaatcacgtgtgtgctagccgattctttatctccttgtttacatggaatatggatgcag
upper sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S91_182V6.1 (Physcomitrella patens), 5'ss of exon 7
AGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGgtatattta-attccata---atcccatttaacttagttaaaagcttgatc-cgttgtagcaaattcctaggttaagg------aat-ttttgtctttttatttttgtggag-----------
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AGGTCGTCGGTTTAGCGAGGGTACAAGCGCTGATCGAGAAATTCAGCGGACGCTAATGGAGTTGTTGAATCAACTCGATGGATTTGATCAGCTTGGAAAGgtgtgttaagattctgaatctatcctagtaataatagcagacactatggttactctgaaattttttgtcacgtgcatggcagccaatatcttgtctcatttttcacatgtaccgaggatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208088440|gb|GD890728.1|GD890728EST: CGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAG GTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTC
genomic: CGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGgtatatttaa ... tctgctgtagGTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGgtatatttaattccataatcccatttaacttagttaaaagcttgatccgttgtagcaaattcctaggttaaggaatttttgtctttttatttttgtggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA