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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGACCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAACTGTTCGCTCACCTTTAGCGCAGTGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcctttcatgtgtgctttattactggaatgatatttattttcttaatctgtatcttccatcatatatgtag

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 5'ss of exon 6
GAATGACCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAACTGTTCGCTCACCTTTAGCGCAGTGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcctttcatgtgtg----ctttattactgg--aatgatatttattttcttaatctgtatcttccatcatatatgtag
 ||||| ||  | || ||||||||  |||||   ||||||||||||||| |||| ||||| || || || ||||| |||||||| |||||||| || |||||   |   || |  ||| ||     || || | |||   ||  ||| | | || || | || |   ||| |  ||  |     
AAATGATCGCTTGGCTGTTAGCAAATTGGTTGGTAGCTTGACCAGGGGATCTGTCCGCTCTCCCTTGGCTCAGTGTCTTTTGATACGTTACACCAGCCAGgttattcctctcttctgtttgatcatttgataagtggctgattgtatatgtgttatttagctctggtttctaatattcag----

upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 7
GAATGACCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAACTGTTCGCTCACCTTTAGCGCAGTGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcctttcatgtgtgctttattactggaatgatatttattttctta-atctgtatcttccatca-tatatgtag
|||||| ||  |||| ||||||||||| || |||||||| || || |||| |||||||||||| || || || ||||| ||||||||||| || || ||||||  | || |||  || |  | |  |   || |       | ||| | ||   ||   |  ||| || | | | || ||
GAATGATCGCTTAGCTGTTAGCAAGCTAGTCACCAGCTTAACTAGAGGAAATGTTCGCTCACCATTGGCTCAATGCCTCTTGATCCGTTATACCAGCCAGgtgcatatctttttctg-gaacatagtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193372800|gb|FK336534.1|FK336534
EST:     TGCCTTTTGATCCGTTACACAAGTCAG                         GTTATTCATGAATCAGGCCATACACAGTCAGGGGAACGCCCCTTCTATGAT
genomic: TGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcc ... atatatgtagGTTATTCATGAATCAGGCCATACACAGTCAGGGGAACGCCCCTTCTATGAT