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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttatatgtttagccttctggtttgtactttaaaggagtttcttttgtctccctgaaatgattgagacattgtcaacattttgtaaatgcaaatagaacatagacagctgattgtggtccttcattatctattcag

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208029688|gb|GD832066.1|GD832066
EST:     ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|193374461|gb|FK340337.1|FK340337
EST:     TACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTT
genomic: TACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATC-AAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTT
EST: gi|192297484|gb|FG989519.1|FG989519
EST:     ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|207696709|gb|GD676984.1|GD676984
EST:     ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|298173640|gb|HO016976.1|HO016976
EST:     ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|193308761|gb|FK273595.1|FK273595
EST:     ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|298195373|gb|HO039204.1|HO039204
EST:     ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|193331684|gb|FK293340.1|FK293340
EST:     TACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: TACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
EST: gi|193382272|gb|FK348031.1|FK348031
EST:     TACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG                         GATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA
genomic: TACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGgtattttata ... atctattcagGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTA