Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctagatggcccgctctaagaag

Basic information

species Glycine max
transcript GLYMA03G42370.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatg-gctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaat-ttgatgtcctctagatggcccgctctaagaag
||| ||| | || ||||||||||||||  | || ||||| |||||| ||||||| |||||||||||||| || || || ||||| || ||| ||||||||||   ||    |   || |   ||     |  ||||   |||   | |   | | |  || ||   | |||| |  || ||  ||      | |  |    ||      ||
GGCCAATCGTACAGATGCTTGTTTTATCCGTGTAATTGGCAGTGAGTTAGTTCAAAAATATGTTGGTGAAGGGGCACGGATGGTCCGGGAATTATTTCAGgtatgtgcaacattgtgaaaactcacaagaacttatcaattt---tctgcacttaaagtgcttctgtttgacaagcatgtttctgaaaaaaaaaatgttgacttggtttag

upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctagatggcccgctctaagaag
 || ||  |||||||||||||||| ||  | || ||||||||||||||||||||||| |||||||| || |||||||| |||||  | ||||| || |||||  ||  ||| |        ||  |  |   |  ||      || || |    |||    || || |  || |||    || | || | |  |               
AGCAAACCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtatat--ctagggctgtgaatccgtaaaaggttcatccagtttttttcctgc-acacatgttaatatttctgaaacaaaatattctattgtag---------------

upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T03 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctagatggcccgctctaagaag
          |||||||||||||| ||  | || ||||||||||||||||||||||| |||||||| || |||||||| |||||  | ||||| || |||||  ||  ||| |        ||  |  |   |  ||      || || |    |||    || || |  || |||    || | || | |  |               
----------ACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATAT--CTAGggctgtgaatccgtaaaaggttcatccagtttttttcctgc-acacatgttaatatttctgaaacaaaatattctattgtag---------------

upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctagatggcccgctctaagaag
 || ||| |||||||||||||||| ||  | || |||||||||||| |||||||||| ||||| || || |||||||| |||||  | ||||| || |||||  ||   |       |   | ||  |||| |     | |  |  | | | ||   | |    || |  || ||||    | | || | |  |               
AGCAAATCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGTTAGTTCAGAAGTATGTCGGCGAAGGTGCTCGGATGGTCAGGGAACTTTTCCAGgtatatatatggctgtgaatctgtaaatattatcccagtcttttcatgtacgtgtgttcaacatattt--ctgaaatgaattcttctatggtag---------------

upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttatttt-atatttttcgttgtttcca--tgacatgatttcatctgactaaaatttgatgtc-ctctagatggcccgctctaagaag
|||||| || |||||||| ||||||||  | |||||||||||||| || ||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||| |   |||   |      | |  ||| | || || | |||  |||||             || |  || ||||   |  |  | |  ||  ||                  
GGCTAACAGAACTGATGCATGTTTTATTCGTGTTATTGGAAGTGAACTTGTTCAGAAATACGTTGGCGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtcacaagctgccacatgtttacagtttgtcttcatttattttattgttcttgatcattgctatattgtccgactgctacctttttttgctgcag------------------

upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatg--tcctctagatggcccgctctaagaag
 || |||||||| |||||||| || ||  | |||||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| || || ||||  | |          ||     || | | || | ||   |     ||   |||   ||  || |   |||||   |||  |   ||  || ||         || | |  
TGCCAATAGGACAGATGCTTGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGTGCTCGGATGGTCCGTGAGCTTTTCCAGgcaagt----------caatcgttaatcacttcacatccctgaggtttgatatggtttggatttaga-gactatcctttagtcattcgcctggaacctgtatactcacatc

upper sequence: GLYMA03G42370.4 (Glycine max), 5'ss of exon 7
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctagatggcccgctctaagaag-
 || |||||||| ||||| || || ||  | |||||||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| || |||||||| |    | | | ||  |  ||    | ||| | ||||   | ||  |    |  |  |    ||   |  | ||||||       | |||    |  | | |||    
TGCAAATAGGACAGATGCATGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGAGCTCGCATGGTTCGTGAGCTTTTTCAGgtaagatac-atggtgatctctccgcatctttcagatttaa-gatgggttggcgtta-aagaggattccaagagaatttg-------ccagaaaagctacgccaagcgta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718785|gb|BW671986.1|BW671986
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         GCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGGGATGCACGGTTT
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... ctctaagaagGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGGGGTGCACGGTTT
EST: gi|213593731|gb|DB971753.1|DB971753
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         GCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGGGATGCACGGTTT
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... ctctaagaagGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGGGGTGCACGGTTT