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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctag

Basic information

species Glycine max
transcript GLYMA03G42370.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatg-------gctaagatgcacc---ttctatttattttatat-ttttcgttgtttcca--tgacatgatttcatctgactaaaat----ttgatgtcctctag
||| ||| | || ||||||||||||||  | || ||||| |||||| ||||||| |||||||||||||| || || || ||||| || ||| ||||||||||   ||       |  || |  |||       |||  ||||| |    ||    || |||    ||||| |  |   |||||  ||||     ||||  |  | |||
GGCCAATCGTACAGATGCTTGTTTTATCCGTGTAATTGGCAGTGAGTTAGTTCAAAAATATGTTGGTGAAGGGGCACGGATGGTCCGGGAATTATTTCAGgtatgtgcaacattgtgaaaactcacaagaacttatcaattttctgcacttaaagtgcttctgtttgacaagcatgtttctgaaaaaaaaaatgttgacttggtttag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctag---
 || ||  |||||||||||||||| ||  | || ||||||||||||||||||||||| |||||||| || |||||||| |||||  | ||||| || |||||  ||  ||| |        ||  |  |   |  ||      || || |    |||    || || |  || |||    || | || | |   
AGCAAACCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtatat--ctagggctgtgaatccgtaaaaggttcatccagtttttttcctgc-acacatgttaatatttctgaaacaaaatattctattgtag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T03 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctag---
          |||||||||||||| ||  | || ||||||||||||||||||||||| |||||||| || |||||||| |||||  | ||||| || |||||  ||  ||| |        ||  |  |   |  ||      || || |    |||    || || |  || |||    || | || | |   
----------ACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATAT--CTAGggctgtgaatccgtaaaaggttcatccagtttttttcctgc-acacatgttaatatttctgaaacaaaatattctattgtag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttccatgacatgatttcatctgactaaaatttgatgtcctctag---
 || ||| |||||||||||||||| ||  | || |||||||||||| |||||||||| ||||| || || |||||||| |||||  | ||||| || |||||  ||   |       |   | ||  |||| |     | |  |  | | | ||   | |    || |  || ||||    | | || | |   
AGCAAATCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGTTAGTTCAGAAGTATGTCGGCGAAGGTGCTCGGATGGTCAGGGAACTTTTCCAGgtatatatatggctgtgaatctgtaaatattatcccagtcttttcatgtacgtgtgttcaacatattt--ctgaaatgaattcttctatggtag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttatttt-atatttttcgttgtttcca--tgacatgatttcatctgactaaaatttgatgtc-ctctag
|||||| || |||||||| ||||||||  | |||||||||||||| || ||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||| |   |||   |      | |  ||| | || || | |||  |||||             || |  || ||||   |  |  | |  ||  ||
GGCTAACAGAACTGATGCATGTTTTATTCGTGTTATTGGAAGTGAACTTGTTCAGAAATACGTTGGCGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtcacaagctgccacatgtttacagtttgtcttcatttattttattgttcttgatcattgctatattgtccgactgctacctttttttgctgcag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtga----atggctaa--gatgcaccttctatttattttatatttttcgttgtttccatgacatgattt---catctgactaaaatttgatgtcctctag--
 || |||||||| |||||||| || ||  | |||||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| || || ||||  |    || | |||    | ||| | |      ||| ||||  || |   |||  |    ||  |||   |||  | ||  ||  || | | |||     
TGCCAATAGGACAGATGCTTGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGTGCTCGGATGGTCCGTGAGCTTTTCCAGgcaagtcaatcgttaatcacttcacatccctgaggtttgatatggtttgg-atttagagactatcctttagtcattcgcctggaacctg-tatactcacatc

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggctaagatgcaccttctatttattttatatttttcgttgtttc-cat--gacatgatttca------tctgactaaaatttgatgtcctctag-
 || |||||||| ||||| || || ||  | |||||||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| || |||||||| |    | | | ||  |  ||    | ||| | ||||    | | ||  | |   | | |||| ||      | || |  |||    | | |       
TGCAAATAGGACAGATGCATGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGAGCTCGCATGGTTCGTGAGCTTTTTCAGgtaagatac-atggtgatctctccgcatctttcagatttaagatgggttggcgttaaagaggattccaagagaatttgccagaaaagctacgccaagcgta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193354654|gb|FK323306.1|FK323306
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193636108|gb|FK583025.1|FK583025
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|16277955|gb|BI942651.1|BI942651
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193349576|gb|FK316132.1|FK316132
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|207752335|gb|GD725784.1|GD725784
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|37994041|gb|CF805787.1|CF805787
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193366672|gb|FK331974.1|FK331974
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193563010|gb|FK521823.1|FK521823
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|207737354|gb|GD716938.1|GD716938
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193607438|gb|FK558283.1|FK558283
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193354208|gb|FK319808.1|FK319808
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193646525|gb|FK587412.1|FK587412
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTT-GATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193438321|gb|FK400030.1|FK400030
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|193364162|gb|FK332208.1|FK332208
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGNGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|208325876|gb|GE123310.1|GE123310
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGGAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: gi|21601986|gb|BQ612317.1|BQ612317
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgaatggct ... tgtcctctagATGGCCCGCTCTAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA