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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagattttgttacatttaattaaaaaaatgaaaatgagttgattttattgtgtttgggtattatgtgttgactttggagatgctttacag

Basic information

species Glycine max
transcript GLYMA03G41650.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41650.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g29720.1 (Oryza sativa), 5'ss of exon 7
TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagattttgttacatttaattaaaaaaatgaaaatgagttgattttattgtgtttgggtattatgtgttgactttggag-atgctttacag----------------------------
 ||| |  ||||||  |   ||||| ||| | || ||||||||| |||| |||||||| | ||||||||| ||||||||||| || ||||| || |     ||||   |   | | |  |  |     |  |||   |    ||  |    |||| || || | | ||      |   || |  |                            
CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGgtaaatccctgttctgtc--acttagtagttatgtttttgtttgctaatgtgcatgccagtatcatttgctaaattcattttaaaattaatggtatcttaacttactatcattgtatgcag

upper sequence: GLYMA03G41650.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g12470.1 (Oryza sativa), 5'ss of exon 7
TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagat------------tttgttacatttaatt-------aaaaaaatgaaaatgagttgattttattgtgtt---tgggtattatgtgttgactttggagatgctttacag
| |     || |   ||   |||||||||||||||||||||||| | ||||| || || | ||| ||||| |||||| ||   ||||| |||||||| |            |||| || | |  |||       | | || |   | |  |   |   ||| | | |   || || ||   | |      ||    ||||  ||||
TTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAgtgagctactttactgaagtttggtatactctattctggtttagataatttggattctgccaaacctatagagctcactgtgtttttcatatctttaatgctcttgctgcacag

upper sequence: GLYMA03G41650.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G059018_T01 (Zea mays), 5'ss of exon 7
TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagattttgttacatttaattaaaaaaatgaaaatgagttgattttat--tgtgtttgggtattatgtgt-tgactttggagatgc--tttacag
|||| |  || ||| ||  |||||||||  | || ||||||||| |||| |||||||| | ||||||||| ||||||||||| |||||||| || |  || ||   |  ||  | |   |||     ||  ||| | || ||       ||   |   |||  | | |||||    |  |  | | |||
TACAAAATTACCGTGTTCTGTGGACTGGGGTGGGTGCACAACTTGCTCGAGATGTTCCTTTCTCTGCTATATGCTGGTCAACTCTTGAGCCTgtaattttctgcc-ctcttggtcatggaaactcctatttgttaaattcatgcctcactttcatgacatgaatctcactttactaacaccatgttcag

upper sequence: GLYMA03G41650.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G46320.3 (Arabidopsis thaliana), 5'ss of exon 6
---------TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagattttgttacatttaattaaaaaaatgaaaatgagttgattttattgtgtttgggtattat-gtgttgactttggagatgctttacag
         || || | ||| |  | |  |||||||||||||| || |||||| || | |||||||||| |||||| || |||||||| |  |||||||| |||||   |  |     |     ||| | ||  | ||      ||| | |  |   |   | |  |   | |   ||    |   |||||   
GGGCTCAAATA-ATGGATATAGGATGTTATGGACTGGTCTTGGTGCTCAACTTGCTAGGGATGTTCCATTCTCTGCAATCTGCTGGTCGATACTTGAGCCTgtgagtagtaatctgtctctgaaaaacacatccatattcacccattgtgtcttccatccatgtcctcacgattgtttcattgtgactttag--

upper sequence: GLYMA03G41650.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0046g01370.t01 (Vitis vinifera), 5'ss of exon 7
TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagattttgttacatt---taattaaaaaaatgaaaatgagttgattttattgtgtttgggtattatgtgttgactttggagatgctttacag----------
| || || || ||| | | ||||||||| |||||||| |||||  |||| |||||||| | ||| || || ||||||||||| |||||||||||||||  |  ||   |     | ||  |   ||   |   |  | ||| |||  | |      ||    |  |    |||    |  ||| |            
TTCAAAGTTACCGTGTCTTGTGGACTGGCCTTGGAGCGCAACTCGCTCGCGATGTTCCTTTCTCCGCAATCTGCTGGTCAACACTTGAGCCAgtgagacctcattctctaaagcagtttcatggatagtacatatctaattatatc-tttccacacatccaatcctttacttgtttctttttttcccatgtatgcag

upper sequence: GLYMA03G41650.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S134_166V6.1 (Physcomitrella patens), 5'ss of exon 8
TACATAGGTATCGTTTTTGGTGGACTGGTCTTGGAGCACAACTTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagattttgttacatttaattaaaaaaatgaaaatgagttgattttattgtgtttgggtattatgtgttgactttggagatgctttacag--------
| ||  |   | |  ||  |||||| ||  | |||||||| ||| |||| ||||||||||  |||||||||||||||      || ||||| || || ||      | | ||| |             ||  |||  |  |        |   |  |  || |   ||   || |   |||           
TGCAAGGAATTAGGGTTATGTGGACAGGCGTGGGAGCACAGCTTGCTCGAGATGTTCCATTTTCTGCTATTTGCTGGAGTGTTCTGGAGCCTgtaagcttacaactcttgtaacttgtctccaattcttgttttgtatacacaaaacaggaagagcagttggtctgttgttaggtttattatttttgtattg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208071056|gb|GD871817.1|GD871817
EST:     TTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCA                         ATTAGGAAAAGCATTCTTGGCCTAGCGGGTGATGGAGCAAGTGCAGCCACT
genomic: TTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagatttt ... tgctttacagATTAGGAAAAGCATTCTTGGCCTAGCGGGTGATGGAGCAAGTGCAGCCACT
EST: gi|208147147|gb|GD944884.1|GD944884
EST:     TTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCA                         ATTAGGAAAAGCATTCTTGGCCTAGCGGGTGATGGAGCAAGTGCAGCCACT
genomic: TTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagatttt ... tgctttacagATTAGGAAAAGCATTCTTGGCCTAGCGGGTGATGGAGCAAGTGCAGCCACT
EST: gi|208279516|gb|GE073667.1|GE073667
EST:     TTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCA                         ATTAGGAAAAGCATTCTTGGCCTAGCGGGTGATGGAGCAAGTGCAGCCACT
genomic: TTTCTCGTGATGTTCCATACTCTGCTATTTGCTGGTCAACCCTTGAGCCAgtgagatttt ... tgctttacagATTAGGAAAAGCATTCTTGGCCTAGCGGGTGATGGAGCAAGTGCAGCCACT