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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAGgtttgtggagtggatatctaagtttagttgcaaattttcagtttacaattatattttaaagttgtaacttgcttttcctcctatttatttattatcataa...

Basic information

species Glycine max
transcript GLYMA03G40440.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAGgtttgtggagtggatatctaagtttagttgcaaattttcagtttacaattatattttaaagttgtaacttgcttttcctcctatttattt----attatcataa
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GTTGTGCGTATTTGGGACCCAAGAACTGGTTCAAAGACTATGAAGCTCAGAGGGCATACAGATAACATTAGGGCTCTGCTTCTGGATTCTACTGGCAGgtgggttgcatgaa-atctgcagttatttgacaag--gcaattgtaagcatttttgctaagcttcaaattgattttggtctttttcatttgcaaatttttata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924456|gb|AW830482.1|AW830482
EST:     AGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAG                         ATATTGTTTATCAGGATCTTCAGACTCTATGATAAG
genomic: AGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAGgtttgtggag ... ataattgcagATATTGTTTATCAGGATCTTCAGACTCTATGATAAG