Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCTGTTGAAGAGTGGTTCTTCCATAGATTGAAAGCGGGACGCCCAATTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatttgcaatgttactcttctttagccggatcatattcatttttctaccagagttatgtatcaatgtatatattcatgcctactaatctatcat...

Basic information

species Glycine max
transcript GLYMA03G38930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0060g00820.t01 (Vitis vinifera), 5'ss of exon 7
CAACCCTGTTGAAGAGTGGTTCTTCCATAGATTGAAAGCGGGACGCCCAATTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatg-aaatttgcaatgttactcttctttagccggatcatattcatttttctaccagagttatgtatcaatgtatatattcatgcctactaatctatcat-
||||||||||||||| |||||||||||  | |||||||| || ||||||||||| ||||||  ||||||||| |||||||||||||| ||||||||||||||  |  ||  ||||||   | | | ||   | |||| ||  | ||  |  | ||   |||        | |     | ||       |  ||   | ||  
CAACCCTGTTGAAGAATGGTTCTTCCACCGGTTGAAAGCAGGTCGCCCAATTCCAATCCCCAACTCAGGAATTCAGATAACCCAACTGGGTCATGTTAAGgttagtgaaactgcaatcccagtat-ctcaggacggaacaactccaagtcac-actgaagtcccactgaagtcctggttttttctttaaaaaaaaaaacaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31468986|gb|CD411014.1|CD411014
EST:     CTATCCCCGGCTCAGGAATACACGATAACCACAACTTNGGTCATGTTAAG                         GATTTGGCCAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: CTATCCCCGGCTCAGGAATACA-GATAACC-CAACTT-GGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|192311714|gb|FK003575.1|FK003575
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GACTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120534123|gb|EH262256.1|EH262256
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTA
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTA
EST: gi|20448825|gb|BQ252949.1|BQ252949
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|10238358|gb|BE807174.1|BE807174
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|31458918|gb|CD400946.1|CD400946
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|19271086|gb|BM887342.1|BM887342
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120531868|gb|EH260001.1|EH260001
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120531132|gb|EH259265.1|EH259265
EST:     TTCCTATCCCCGGCTCAGGAATACAGATTACCCAACTTGGTCAAGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|209718792|gb|BW671993.1|BW671993
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120534655|gb|EH262788.1|EH262788
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|214008768|gb|DB988261.1|DB988261
EST:     CAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTGA-CCAGGTTCTTGGTAATGAGAAGGCCAGCAA
genomic: CAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTT-ATCCAGGTTCTTGGTAATGAGAAGGCCAGCAA
EST: gi|209721698|gb|BW682539.1|BW682539
EST:     GGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: GGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|31468934|gb|CD410962.1|CD410962
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCGAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|17519549|gb|BM188591.1|BM188591
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|209708026|gb|BW657081.1|BW657081
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|9258206|gb|BE346353.1|BE346353
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|14206331|gb|BG840009.1|BG840009
EST:     TCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAAG                         GATTTGGCAAAAGCTTTTATCNCAGGTTCTTGGTAATGAGAAGGCCAGCA
genomic: TCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTT-AAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATC-CAGGTTCTTGGTAATGAGAAGGCCAGCA
EST: gi|213601855|gb|DB982580.1|DB982580
EST:     CAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: CAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|6134478|gb|AW132871.1|AW132871
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|209697178|gb|BW672943.1|BW672943
EST:     CCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: CCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120531334|gb|EH259467.1|EH259467
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120531252|gb|EH259385.1|EH259385
EST:     TTCCTATCCCCGGCTCAGGAATACAGATTACCCTACTTGGTCATGTTAAG                         GATTTGGCCAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|13252610|gb|BG363513.1|BG363513
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATC
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATC
EST: gi|120531009|gb|EH259142.1|EH259142
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120530943|gb|EH259076.1|EH259076
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120496238|gb|EH224405.1|EH224405
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|31457494|gb|CD399522.1|CD399522
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|22541846|gb|BU091689.1|BU091689
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAAGCCAGCCAA
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGC-AA
EST: gi|192311713|gb|FK003574.1|FK003574
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GACTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
EST: gi|120528898|gb|EH257032.1|EH257032
EST:     TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAG                         GATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG
genomic: TTCCTATCCCCGGCTCAGGAATACAGATAACCCAACTTGGTCATGTTAAGgtatgaaatt ... attgtgacagGATTTGGCAAAAGCTTTTATCCAGGTTCTTGGTAATGAGAAGGCCAGCAAG