Sequence
atgc intronic sequence ATGC exonic sequenceAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttgatatattctttcattctttgacttgttatttccatataatttaattttttaaggttaaatgaaacttctatgtag
Basic information
species | Glycine max |
transcript | GLYMA03G37910.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtc-ttgatatattctttcattctttgacttgttatttccatataatttaattttttaaggttaaatgaaacttctatgtag
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AAAACAACTTCAACGCCAAAGTTGCAGATTTTGGCCTAGCCAAACAAGCTCCTGAAGGCAGGGGTAATCACTTATCTACTCGTGTTATGGGCACATTTGGgtgagttgctcatatctctcgacagttttcatat----acaaccttaaattctgagttgcctattgaatccgcgatctgttttcag
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g01590.t01 (Vitis vinifera), 5'ss of exon 5
AGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttgatatattctttcat-tctttgacttgttatttccatataatttaattttttaaggttaaatgaaacttctatgtag
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AGAACAACTTTCATGCCAAGGTTGCTGATTTTGGCCTAGCCAAAAAGGCACCTGAAGGCAGGGCAAATTACCTGTCTACTCGTGTGATGGGCACATTTGGgtttgtcatactctctcatcttttgtccttaacttagtattacc---tagtttaatgtgtagtaatgttactaaattggtttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6566531|gb|AW234174.1|AW234174EST: CCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGG GTACGTTGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGA
genomic: CCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttg ... ttctatgtagGTACGTTGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttgatatattctttcattctttgacttgttatttccatataatttaattttttaaggttaaatgaaacttctatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT