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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcatttatattcacctctgatttacgtaaactacttgttagttgatgtcttttgggatgccagctgcgctgtcaaataatctagggacttctattt...

Basic information

species Glycine max
transcript GLYMA03G36430.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 7
TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcatttatattcacctctgattta-cgtaaactacttgttagttgatgtcttttgggatgccagctgcgctgtcaaataatctagggacttctattt---
|  | ||||||||||| ||||||||||||||| ||||||||||||| ||| | |||||||| || || | | |  || |  | ||   |||  |||| | |    | || | ||||| | |    || ||  |   | || |    | |  |    |    |   |   ||| ||| |  ||| | | ||   
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTTACA--CAGAACAATTATGGgtaggcatctgt---tatctttcatttatcattgcttattttctcagtcat-taaactagattttttgaattgagattttatactctggtaactgcaacttaac

upper sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0319g00060.t01 (Vitis vinifera), 5'ss of exon 6
TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcatttatattcacctctgattta-cgtaaactacttgttagttgatgtcttttgggatgccagctgcgctgtcaaataatctagggacttctattt---
|  | ||||||||||| ||||||||||||||| ||||||||||||| ||| | |||||||| || || || ||   | |  | ||   |||  |||| | |    | || | ||||| | |    || ||  |   | || |    | |  |    |    |   |   ||| ||| |  ||| | | ||   
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACATAGAACAATTATGGgtaggcatctgt---tatctttcatttatcattgcttattttctctgtcat-taaactagattttttgaattgagattttatactctggtaactgcaacttaac

upper sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 7
TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcatttatattcacctctgattta-cgtaaactacttgttagttgatgtcttttgggatgccagctgcgctgtcaaataatctagggacttctattt---
|  | ||||||||||| ||||||||||||||| ||||||||||||| ||| | |||||||| || || || ||  || |  | ||   |||  |||| |||    | || | ||||| | |    || ||  |   | || |    | |  |    |    |   |   ||| ||| |  ||| | | ||   
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatctat---tatctttcatttatcattgcttattttctcagtaat-taaactagattttttgaattgagattttatactctggtaactgcaacttaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326988|gb|FK015185.1|FK015185
EST:     ATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAG                         TTGTACAAAAACACGTTGAGCAACTTGATAGACCAGAAAATTTCTCTACAT
genomic: ATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcattt ... ttttgggcagTTGTACAAAAACACGTTGAGCAACTTGATAGACCAGAAAATTTCTCTACAT