Sequence
atgc intronic sequence ATGC exonic sequenceGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaacttgtatgagattggctacacttaatgcaggacaaagtctaattacaaatttataacattagtacttttcatagggtgtttttcttcctggattaaattttggaatgagatagaccatttcatttgcag
Basic information
species | Glycine max |
transcript | GLYMA03G34360.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g05720.1 (Oryza sativa), 5'ss of exon 6
GTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaacttgtatgagattggctacacttaatgcaggacaaagtctaattacaaatttataacattagtacttttcatagggtgtttttcttcctggattaaattttggaatgagatagaccatttcatttgcag
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GTGTCTTGCCATCAGCAGTCGTGGTGATTTTATTGTAACAGGTTCTCATGACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAGgtatgcagtgattgtattgt----------tttaatg------gaatcctgttattgaatgtttgctat-----ctttgcttagatttttcttagctctgaa---acccacaaaaataaatgcag--------------
upper sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 7
lower sequence: AC209858.4_FGT002 (Zea mays), 5'ss of exon 6
GTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaacttgtatgagattgg--ctacacttaatgcaggacaaagtctaattacaaatttataacattagtacttttcatagggtgtttttcttcctggattaaattttggaatgagatagaccatttcatttgcag
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GTGCCTCACACTCAGCAGTCGCGGTGATTTTGTTGTAACAGGTTCACATGATCGTTCCATTCGGCGTTGGGATCGTACTGAAGAACAACTGTTCATTGAGgtattttgtgattatatagggttgagatgaaatttctttttgagtagtcttggaacatattctagcagtttcttcaactttattagagattgctctttttcacccctaaatctgcaat---ataccccag-----------
upper sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G21540.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaacttgtatgagattggctacacttaat-gcaggacaaagtctaattacaaatttataacattagtacttttcatagggtgtttttcttcctggattaaattttggaatgagatagaccatttcatttgcag
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GTGCCTTGCTATCAGTAACCGTGGTGATTTTCTCGTAACAGGATCTCATGACCGCTCCATGCGTCGCTGGGATCGCTCTGAAGAACCTTTCTTCCTCGAGgtaattccccactgttggaagttacttatttcagtttacatgatgaaatcaaatacggaagtcatgcaagttcaagcattcaaatataataactcttcta----------------------------------------
upper sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 6
GTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaacttgtatgagattggctac-acttaatgca-ggacaaagtctaattacaaatttataacattagtacttttcat-agggtgtttttcttcctggattaaattttggaatgagatagaccatttcatttgcag
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GTGTCTGTCAATCAGCAATCGTGGTGATTTTATTGTCTCGGGATCTCATGACCGATCCATTCACCGTTGGGATCGTACTGAAGAGCCCTTTTTTATTGAGgtatggaattagtttgtgacattatatgggaattgaaacatggatgttatggcacactaaattttt--tttttgtccctgtgattggggtgtgactgatgtttaaccaaag---gaaatgctatctgacttcgcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8283884|gb|BE021443.1|BE021443EST: ATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAG GAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAAT
genomic: ATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaa ... tcatttgcagGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTCTTCATTGAGgtatacacaacttgtatgagattggctacacttaatgcaggacaaagtctaattacaaatttataacattagtacttttcatagggtgtttttcttcctggattaaattttggaatgagatagaccatttcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG