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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCCCAACAAGCTCAGGAAGTACATGTAGCTGTTCGGGATTGGCTAAAAAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtttattgtacctgtagttgcattgtgaactgattagtgtcatggaaaaaatgtaagataccatttattaaggttgcatgtttgtcgtgtatt...

Basic information

species Glycine max
transcript GLYMA03G34300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34300.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 5'ss of exon 6
ACTCCCCAACAAGCTCAGGAAGTACATGTAGCTGTTCGGGATTGGCTAAAAAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgt-----aaattgtttattgtacctgtagttgcattgtgaactgattagtgtcatggaaaaaatgtaagataccatttattaaggttgcatgtttgtcgtgtatt
 |||| || ||||| || ||||| ||||||||||| || | ||||||||| ||||||||||| || |||||||| || |||||  |||| || |||||||||     | |||  ||||    |    | |   | | |    |||||| || | |   ||   ||  ||                                    
TCTCCTCAGCAAGCACAAGAAGTCCATGTAGCTGTCCGCGGTTGGCTAAAGAAGAATGTCTCTGAGGAAGTTGCTTCCAAAACGAGAATCATATATGGAGgtgcgttagattagttatctgtcgcaaaatgaaactttatgttgattattgccttctcaat--tgccag------------------------------------

upper sequence: GLYMA03G34300.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g01780.t01 (Vitis vinifera), 5'ss of exon 7
ACTCCCCAACAAGCTCAGGAAGTACATGTAGCTGTTCGGGATTGGCTAAAAAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtttattgtacctgtagttgcattgtgaactgattagtgtcatggaaaaaatg-taagataccat-ttattaaggttgcatgtt-tgtcgtgtatt-
|| ||||  || || |||||||||||  |||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  || ||| |  | |   |   ||  | || |||||     |||  | |||| | || |||  |   || || ||     | | | || | |    | || 
ACACCCCTGCAGGCACAGGAAGTACACATAGCTGTTCGTGATTGGCTTAAAAAGAATGTCTCAGCTGAAGTTGCTTCTAAAACACGAATTATTTATGGAGgtattttatttctactgcagttttctgagtggt-aactgc---atgtacttgaaatattgataattttttatgttctttcaaatacttattatattacctgtta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208251450|gb|GE044161.1|GE044161
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31457431|gb|CD399459.1|CD399459
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31467995|gb|CD410023.1|CD410023
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|298193423|gb|HO033857.1|HO033857
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208235829|gb|GE028685.1|GE028685
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCGGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193701495|gb|FK634587.1|FK634587
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31308504|gb|CD393707.1|CD393707
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCTAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193594781|gb|FK547200.1|FK547200
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|7028349|gb|AW458132.1|AW458132
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193661690|gb|FK602616.1|FK602616
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTG
EST: gi|208048148|gb|GD847891.1|GD847891
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208048963|gb|GD848874.1|GD848874
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|151395984|gb|EV265861.1|EV265861
EST:     A-GAATGTCTCAGATGAAGTTGCGTCTAAA-CACGAATTATTTTATGGAG                         GGTCTGTAAATGGAGGCA
genomic: AAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTT-ATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCA
EST: gi|193388015|gb|FK355224.1|FK355224
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|16284155|gb|BI945935.1|BI945935
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193380681|gb|FK347406.1|FK347406
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|207703869|gb|GD685859.1|GD685859
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31455871|gb|CD397899.1|CD397899
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTTAAACACGAATGATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCCAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208219211|gb|GE018349.1|GE018349
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31308297|gb|CD393500.1|CD393500
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208107055|gb|GD907460.1|GD907460
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|207690328|gb|GD672945.1|GD672945
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193630459|gb|FK580428.1|FK580428
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|16279304|gb|BI943365.1|BI943365
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208279665|gb|GE080046.1|GE080046
EST:     AAGAATGTCTCAGATGAAGTTGCGTCTAAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAGAATGTCTCAGATGAAGTTGCGTCT-AAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208159624|gb|GD957976.1|GD957976
EST:     AATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTACTGAACTGGCAAAGCAAGAAGATATTG
genomic: AATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|207827177|gb|GD799084.1|GD799084
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|207759952|gb|GD730811.1|GD730811
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31465283|gb|CD407311.1|CD407311
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193586115|gb|FK542495.1|FK542495
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCCGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208058575|gb|GD860692.1|GD860692
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|16284094|gb|BI945902.1|BI945902
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193329403|gb|FK296557.1|FK296557
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193312291|gb|FK276075.1|FK276075
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|254339332|gb|GR848049.1|GR848049
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208266934|gb|GE060985.1|GE060985
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208056628|gb|GD850345.1|GD850345
EST:     AAGGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31467830|gb|CD409858.1|CD409858
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193334279|gb|FK299231.1|FK299231
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193461696|gb|FK425453.1|FK425453
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208242981|gb|GE037457.1|GE037457
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCACGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208045534|gb|GD838010.1|GD838010
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208322209|gb|GE124728.1|GE124728
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACCGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208145583|gb|GD940926.1|GD940926
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193642544|gb|FK593298.1|FK593298
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|10231702|gb|BE800590.1|BE800590
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|207813878|gb|GD785113.1|GD785113
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208157521|gb|GD953701.1|GD953701
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAGCAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31469935|gb|CD411963.1|CD411963
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193548983|gb|FK505390.1|FK505390
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208199466|gb|GE001612.1|GE001612
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|31306225|gb|CD391428.1|CD391428
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208187723|gb|GD986005.1|GD986005
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|207806969|gb|GD778844.1|GD778844
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193391555|gb|FK354144.1|FK354144
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAA-GCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|20814422|gb|BQ298900.1|BQ298900
EST:     AAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193306165|gb|FK272334.1|FK272334
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGA
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGA
EST: gi|31468627|gb|CD410655.1|CD410655
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193346012|gb|FK310806.1|FK310806
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208055063|gb|GD853668.1|GD853668
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|254346362|gb|GR856084.1|GR856084
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|208131127|gb|GD927234.1|GD927234
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAGTTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193632145|gb|FK581463.1|FK581463
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
EST: gi|193510154|gb|FK472126.1|FK472126
EST:     AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAG                         GGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtt ... tttttttcagGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCCCCAACAAGCTCAGGAAGTACATGTAGCTGTTCGGGATTGGCTAAAAAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGgtaaattgtttattgtacctgtagttgcattgtgaactgattagtgtcatggaaaaaatgtaagataccatttattaaggttgcatgtttgtcgtgtatt

- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaaa