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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAGgttttttatctgctactcttagtcttagattctcatcaattttcagttgcatcagtgacagattttatattgaatcttatatggttttttggttctcgtccag

Basic information

species Glycine max
transcript GLYMA03G33680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAGgttttttatctgct-actcttagtcttagattctcatcaattttcagttgcatcagtgacagattttatattgaatcttatatggttttttggttctcgtccag
|||||||| ||| | || || ||||| || |||||||||||||||| |||||| |||||||||||  ||||  |    | |||   |||| || ||||| | |  |  || |   |   |||   |  | ||||  || |    || || ||||| ||   |     
GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAGgtaatttaagtttggaatctatttcttggactctcagccacat--aggtctgttcttgat--acctaatataaaagc----attgtcttttgtttacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193393088|gb|FK358380.1|FK358380
EST:     AATGTTAGACTTAGAGATACAGTGAACCAG                         CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: AATGTTAGACTTAGAGATACAGTGAACCAGgttttttatc ... tctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: gi|19053265|gb|BM731932.1|BM731932
EST:     CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAG                         CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAGgttttttatc ... tctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: gi|31471750|gb|CD413778.1|CD413778
EST:     CTTCTGACCTTAAAAATACCCATGTTAGACTTAGAGATACAGTGAACCAG                         CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAGgttttttatc ... tctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT