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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttgatatatcaaattttccccggatgtcttcaataagacatgcatgcattcttacgattgtctgcatctcattttttttgtctac...

Basic information

species Glycine max
transcript GLYMA03G33000.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33000.4 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttgat--atatcaaattttccccggatgtcttcaataagacatgcatgcattcttacgattgtctgcatctcattttttttgtctac--
||| || || |||||||||||||| |||||||| ||||| || || || || ||  | ||||| |||||||||||  |||||||  || |||| |||||||||| | | | |   ||  |   ||  | | |      |  |||  ||  ||||| |  ||    | |  | | || | | |   |||    || |||  |   
TGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTATAATGCAGgtatgtctttgtattttagttggtactagaatcctattgcttgtactct-taagaaaaaca---gtgcacaagtttcttttcccttcagccattatgtaaattc

upper sequence: GLYMA03G33000.4 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 6
TGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttgatatatca--aattttccccggatgt--cttcaataagacatgcatgcattcttacgattgtctgcatctcattttttttgtctac
||| || || ||||||||||| || |||||||| ||||| || || || || ||  ||||||| |||||||||||  |||||||  || |||| ||||||||||   | | |    | ||||||||      ||| |   |||   | ||| ||    ||    | || |||  |  |   |  | || |||||       |  
TGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTATAATGCAGgtatgcttcttttttat-atatatcattgggattcacaaaatggtacatcagtagtg-atctgagtatccttgggcataagttgagctaattttcaaatctt--

upper sequence: GLYMA03G33000.4 (Glycine max), 5'ss of exon 7
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttgatata---tcaaattttccccggatgtcttcaataagacatgcatgcattcttacgattgtctgcatctcattttttttgtctac--
| ||||||||||||| || || || || ||||| |||||||| || || |||||  |||||||||||||||| ||  | |||||  |  | ||||||||||||   | ||||   || ||| |   |  |       |   ||   ||  ||||    | | ||   | ||  |||| | ||||||| ||    ||||   |   
TATTCTTTACTCATCTGTCGTATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGATGTTCTTGTCATTATGCAGgta---acatattttttcatacaattttgagaacctgcataattcattacataatgttt-cttgttctattttgatt-tgtgcatctgataagctttgaagaagt

upper sequence: GLYMA03G33000.4 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgtt-gatatatcaaattttccccggatgtctt-caataagacatgcatgc--attcttacgattgtctgcatctcattttttttgtctac
||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||| | |||||||||| ||| ||| ||||||||||| |||| ||||||||||   ||   | ||| || || |   | | |    | |||  |   | |   || || ||||  |||   | |  ||| || |    ||||| ||| ||   
TGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTATCATGCAGgtatgcttaatgctgtttgacatgtgtcactgtttt-gaatgcgtcatattttcacctgtatgctgattacaatgcatgtttggaaacaattttatttatc---

upper sequence: GLYMA03G33000.4 (Glycine max), 5'ss of exon 7
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 5'ss of exon 6
TGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtattt------atatatccgttgatatatcaaattttccc---cggatgtcttcaataagacatgcatgcattcttacgattgtctgcatctcattttttttgtctac
| |  | |||||||||||||| ||||| |||||||||||||| || ||||||||| ||||||||||    |||||| | |||||  |  | |||||||||||| |       |  | |   ||    ||  ||||||   |    | || |  | ||| ||| |  |    ||| |||           |   ||  |           
TATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCATTATGCAGgtactattcaagacttttttttttccttactaaatttcaacatttgtattttgtgaatgagatagactgagatttttatagcaaaggtaaatgcacgtaa---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298048|gb|FG991328.1|FG991328
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGCCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193357096|gb|FK323568.1|FK323568
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAACGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|207831666|gb|GD801720.1|GD801720
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|10236851|gb|BE805739.1|BE805739
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|208275603|gb|GE078223.1|GE078223
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTG
EST: gi|5510301|gb|AI856743.1|AI856743
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|7925031|gb|AW831057.1|AW831057
EST:     GTACTATTTGTGAGGACAGTGATCCACTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTTCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|298199436|gb|HO042799.1|HO042799
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|192296495|gb|FG989111.1|FG989111
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|16105384|gb|BI893124.1|BI893124
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|8827754|gb|BE211484.1|BE211484
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|7588509|gb|AW704365.1|AW704365
EST:     GTACTATGTGTGAGGACAGAGATCCGATGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTAC-GGTTGCTTTC
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTC
EST: gi|192324459|gb|FK015810.1|FK015810
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|7588510|gb|AW704234.1|AW704234
EST:     GTACTATTTGTGACGACAGTGATCCCCTGGATGTCTTGATTATTATGCAC                         GAGCCGGTTCTTCCACGCTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|151404690|gb|EV274504.1|EV274504
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|207702226|gb|GD682981.1|GD682981
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGT
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGT
EST: gi|17022987|gb|BM094021.1|BM094021
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG