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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATATGAGTATATGCAGCAGGACTGGGCCCGCCTTGCCGTGATCTACACCAGAATATTAGAGAACCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgatttcctgttttatagacccctccattttatttttagaaaaaaaaactgttgtgtatagtttgcacattctttctccttttttgggtgtttaattttacttccttggtggtaacggcattgcag

Basic information

species Glycine max
transcript GLYMA03G32410.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32410.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 5
TTGAATATGAGTATATGCAGCAGGACTGGGCCCGCCTTGCCGTGATCTACACCAGAATATTAGAGAACCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgatttcctgttttatagacccctccattttatttttagaaaaaaaaactgttgtgtatagtttgcacattctttctccttttttgggtgtttaattttacttccttggtggtaacggcattgcag
|||| |||||||| |||||||||||||||  |||  ||||| |||| |||||||||||||| ||||| |||| |||| |  | ||| | ||||||||||||| ||||  |  |   |  |    ||  | || | | |    ||    |   | | || || |||        | ||    || | | | |   ||  | | ||                       
TTGAGTATGAGTACATGCAGCAGGACTGGAGCCGAGTTGCCTTGATTTACACCAGAATATTGGAGAATCCAATTCAAAATCTGGATAGATATTTCAGCAGgtaatttt-tactgattgcattaatcattattgtctgtgctgaattgga---tagagtcta-tttatgtggattgtcatggttatggagagaa-aacatcatttga---------------------

upper sequence: GLYMA03G32410.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 5
TTGAATATGAGTATATGCAGCAGGACTGGGCCCGCCTTGCCGTGATCTACACCAGAATATTAGAGAACCCAAATCAACAATTAGATCGGTATTTCAGCAGgtg-atttcctgttttatagacccctccattttatttttagaaaaaaaaactgttgtgtatagtttgcacattctttctccttttttgggtgtttaattttacttccttggtggtaacggcattgcag
| ||||||||||||   |||||||| ||| | || |||||  |||||||||| || ||||| ||||| |||||||| ||| | ||||| ||||| | |||||| || || ||||||| | | |  |  ||||  || ||         |   |||   | | | ||| | |          ||     ||    |  ||||                           
TAGAATATGAGTATTCACAGCAGGAGTGGTCGCGTCTTGCAATGATCTACACGAGGATATTGGAGAATCCAAATCAGCAACTGGATCGCTATTTGAACAGgtggatctcttgtttta-ataactatatatttgcttatttacccttgcattagtttactgttgcttgaagaagagggtggattgaggtggaaagtgttttt---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688456|gb|BF596132.1|BF596132
EST:     ACCAGAATATTAGAGAACCCAAATCAACAATTAGATCGGTATTTCAGCAG                         CTTCAAAGAGTTAGCTGGAAATCGACCTTTATCAGAGTTACGAACTGCTGA
genomic: ACCAGAATATTAGAGAACCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgatttcct ... ggcattgcagCTTCAAAGAGTTAGCTGGAAATCGACCTTTATCAGAGTTACGAACTGCTGA