Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactgcattttcttttaatctttcctagtatatttctgttttgtactaattaagtgataaacattgctattttgatacttgccctcatttcag

Basic information

species Glycine max
transcript GLYMA03G31600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G31600.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 5'ss of exon 7
GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgta------------tgaactgcattttc--ttttaatctttcctagtatatttctgttttgtactaat-taagtgata-aacattgct--attttgatacttgccctcatttcag--------------------------------------
|| || |||||||||||||| ||||||||||| |||||| | || |||            | |   | |||| |  | | ||  |   |||| | |     |  |    ||  | |     | | ||||| | |  |  || ||| |   |     ||                                         
GCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGgtaagttgaggcagctaagtcgaatttacaatatcaaaatgggctagcaaaacatggcctaaggcttttgtttacaacacaacatcgttgaaaattaatagtactctaggctttcaccctttgctgactgtatttgtctgctatactgtttcag

upper sequence: GLYMA03G31600.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0141g00590.t01 (Vitis vinifera), 5'ss of exon 7
GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactgcattttcttttaatctttcctagtatatttctgttttgtactaattaagtgataaacattgctattttgatacttgccctcatttcag---------
|| || || |||||||||||||||||||| ||||||||  |||| ||||| ||   ||||  | |       | |  |  | ||| |  |||| ||   |  | |  ||| || |||     | || ||    || |||  ||         
GCTTACTTTATGCAAATTGACGGCACATTGAATAAATTATCCACGgtatgcaccaaatttgttgt------atacaggcttcttttttatttgaacagttgcatttgtaagcactgccgggat-attctcattctgattgaagcagactcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932940|gb|BU550079.1|BU550079
EST:     GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA                         TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
genomic: GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactg ... ctcatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
EST: gi|13312668|gb|BG406319.1|BG406319
EST:     GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA                         TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACNAG
genomic: GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactg ... ctcatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATAC-AG