Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag

Basic information

species Glycine max
transcript GLYMA03G28320.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g20310.2 (Oryza sativa), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
   ||| | |||||||||||||||||||||||||| || ||||| || ||||| |||||||||    || |      || |||        |||  | ||||   ||   |   ||||  | | |    ||   |  |  | |     | || ||||| |  |||    ||  |||||                                        
GTGTTACGCCGGCTTGCTCAAAATCGTGAGGCTGCAAGAAAAAGTCGGCTGAGAAAAAAGgta----ctataaccacaacttt--------ttgtcatattacc-tgtccttttttggacaatggaattatgacttctggtctc----cgcaccaactaaggatgcac-atccatatt----------------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
||| |  | ||||||||||||||||||||||| || || ||||| || |||||||||||||||   |      | ||  | |||  |   |||      ||  | ||| ||||    |    |||||    |   ||||  ||| |   |    |||||| |    | |  |||                                            
ACAATTCGGCGGCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtactactgcagat-ttgctcttatgttcgctt------ttgctctga-ataaaaaagcc--ttgtttggaaaagcataggattaat-tctgtgaacttacc----tgtgcaaac-------------------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G056099_T01 (Zea mays), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
   ||| |||||||||| |||||||||||||| || || |||||||| |||||||||||||||      ||  |   |    |   |  || ||| |   ||||   | ||        |  | || || | |||||  |   |||  |         | |    |  | | |||                                           
GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGCCGGCTGAGGAAAAAGgta------ttattagcatgactgtgtacacctgggat-ctattcctacat--------ttttggtgcagtgtgtcac-tccctgatgcatgcatgtatgtgcactagtgtgaatc------------------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174284_T01 (Zea mays), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
   ||| |||||||||| |||||||||||||| || |||||||| || |||||||||||||||      ||  |   |    |      |  ||| |   ||||    || || || |      || || | |||||     ||  |     |    |   |  |   ||    |                                           
GTTTTACGACGGCTTGCCCAAAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGGAAAAAGgta------ttattagcatggctgtgcacatctgggag-ctatttc--tacaattttg------gtgcagtgtgtcactcccttatgcatgcatgtatgtgcgcgcgcta-gtgtg------------------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 4
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
|||||  | || ||||||||||||||||||||||| ||||| |||||||| ||||| |||||| |    |||  |||   | || ||   ||| | |  | |  |||       ||| || | | ||   | |   ||||| ||  ||  |||||  ||||  |  | |||| |                                            
ACATTGCGTCGCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtattttagtt---tctacat---ctttgtacttaaaagtg------tttgtttggatattagttttagtatatttttttgaagcaacactttatgtt--tctataga--------------------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattg-agacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
||| |  |||||||||| |||||||||||||| || || ||||| || |||||||||||||||        ||  | ||||| |  || | | | | ||  |||| ||| |   ||  ||  |||    |   || || |   |  |  |   |   | |  |  |||||                                                 
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgta--------tcactaaatttcatctgtattagaacaa--attgagatgttctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt-------------------------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G125243_T01 (Zea mays), 5'ss of exon 6
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
||| |  | || ||||| ||||||||||| |||||||||||||||||| |  | ||||||||||                ||| || |   |||||| |||| ||     |  |||  ||     ||| || | |  |  |  |      || || |   |  |||  ||  | | || ||| |                                  
ACACTTCGGCGTCTTGCCCAAAATCGTGAAGCTGCCAGGAAAAGCCGATTACGAAAAAAGgtaa----------------tttggaag---ttggaagattactgaatctttgcttctttcag-attccatttatgttcatccta----tcatcatcacctagtgtggtaccagtcttgctgca----------------------------------

upper sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g05170.t01 (Vitis vinifera), 5'ss of exon 6
ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgt--taattttagatgaacttggaaaattatt------gtgatat------aacttggtt---agttgttcaatat-----------gtcata--ttattgagacccaacaac-ttatcatgttttataaatatttctgaacttctttt---ttaaatccttgtttctattcattcag-----
|||||| | |||||||||||||||||||| |||||||| ||||||||| | |||||||||||| | ||| || ||   | | || | ||    |    | || |||      || || |      ||||  |||   |  ||||  |||            || ||   |||||  | | ||    |  | | |||||  | |||  |    |  | |  | |    ||||||| | ||| |  |   ||       
ACATTACGCCGGCTTGCTCAAAATCGTGAAGCTGCCAGAAAAAGCCGATTAAGGAAAAAGgtaggtcctgttatgaaatgagttcacatttgatgtagacatcattttcactgttatgttgcacaaactgagtttctaagtgttggatagtgtattttttggttatggtttattctgtctcattttcactgttatgttacacaaacctgggagtgcattgtgtgcactaaatccctttttttggtttctctctttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208234381|gb|GE034964.1|GE034964
EST:     AGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: AGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|8285582|gb|BE023141.1|BE023141
EST:     CCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: CCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|120532168|gb|EH260301.1|EH260301
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|193450264|gb|FK414358.1|FK414358
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCGGGAAAAGCCGACTGAGGAAAAAG                         GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: gi|254326604|gb|GR841196.1|GR841196
EST:     GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAG-AAAA-G                         GCATATGTGCAACA-TTAGAGAGCAGTAG-T-GAA-CTGACCCA
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCA