1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATATATGTACCTCTTGAAGGAAGTCGATCAACAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGgtttgcttttgatatgtgtgtgtgtgtgtgattataggtccgctacatccttatttaaatttcaaaatgcttaaaattttgttctaagtaccataaatcttataataagtccaccccggccccctattcatctttaaattcctatgtatag
species | Glycine max |
transcript | GLYMA03G27660.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAG GCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAATEST: gi|208170149|gb|GD968334.1|GD968334
genomic: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGgtttgctttt ... ctatgtatagGCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAAT
EST: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAG GCAGAGAGAAGAATACTACTTCTCTTCEST: gi|209698608|gb|BW656472.1|BW656472
genomic: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGgtttgctttt ... ctatgtatagGCAGAGAGA-GA-TACTACTTCTCTTC
EST: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAG GCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAATEST: gi|193512621|gb|FK466375.1|FK466375
genomic: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGgtttgctttt ... ctatgtatagGCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAAT
EST: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAG GCAGAGAGAGATACTACTTCTCTTCACCGTG
genomic: CAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGgtttgctttt ... ctatgtatagGCAGAGAGAGATACTACTTCTCTTCACCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATATGTACCTCTTGAAGGAAGTCGATCAACAGTTGTGCACACTGCTTGGGCTCTTTTGGGTCTAATTCTTGCTGGACAGgtttgcttttgatatgtgtgtgtgtgtgtgattataggtccgctacatccttatttaaatttcaaaatgcttaaaattttgttctaagtaccataaatcttataataagtccaccccggccccctattcatctttaaattcctatgtatag
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