Sequence
atgc intronic sequence ATGC exonic sequenceGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGgtataagggctgatatatttataaatctcttatttcaacttatggtatatagcaaaacacttttatggtggcattttgtggtgaatctgctactatggcc...
Basic information
species | Glycine max |
transcript | GLYMA03G24280.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 5'ss of exon 7
GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGgtataagggctgatatatttataaatc-tcttatttcaacttatggt--atatagcaaaacacttttatggtggcattttgtggtgaatct---gctactatggcc
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GAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtat----gct-atatttgtaccaactatggtatttccagtagatattgatgtagtaagctagctgaact-tgatttaccatggagaagctcagaatcctttgtta
upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 7
lower sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 7
GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGgtataagggctgatatatttataaatctcttatttcaacttatggtatatagcaaaacacttttatggtggcattttgtggtgaatctgctactatggcc
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GAACCATAAGCAAAGGTGCGGCTCTGTTACACCAAGAAGGAGCAAGAGAAGTATACGCTTGTACCACTCATGCCGTTTTTAGgta-agtccatgaaatattt-----tctctgtgttggaattataa-aaaaagagaaagaagctgacatatgcatttgtgtctatattcggaaacag----
upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 7
GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGgtataagggctgatatatttataaatctcttatt-tcaacttatggtatatagcaaaacacttttatggtggcattttgtggtgaatctgctactatggcc
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GAACTATTGCTAAAGGAGCAGCTCTGTTGCATCAAGAGGGTGCCCGAGAAGTCTATGCATGCAGCACTCATGCTGTTTTTAGgtatgtgga-tgatttctacaggattttttttctctttgattccagtatgtatcatcttcttcttaggaggaacaagaaaaaaaaaacttacatcgtgaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26268807|gb|CA819870.1|CA819870EST: CAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAG TCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCAT
genomic: CAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGgtataagggc ... gcctttgcagTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAGgtataagggctgatatatttataaatctcttatttcaacttatggtatatagcaaaacacttttatggtggcattttgtggtgaatctgctactatggcc
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT