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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATGgtaattgctttagtgggccaaataacttgctgtttattgggaattcttgttttgacaaataatggtggcaaaagtgtgttttcttttgtcttcttccttgcag

Basic information

species Glycine max
transcript GLYMA03G23870.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G025659_T02 (Zea mays), 5'ss of exon 4
GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATGgtaattgctttagtgggccaaataacttgctgtttattgggaattcttgttttgacaaataatgg--tggcaaaagtgtgttttcttttgtcttcttccttgcag
| ||||| |||||||| ||||||||||| | |||||| |||||||| ||||| ||||||||     ||     | || | |   | ||| |||||         |||||   | || ||||   || ||| |   |  |  |||  | || ||   || |||
GGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATGgtaaaatgatt-----gtcacaca---tactgattatt--------ctgtttcacccaacaatgcattgtcaataacataataacttgag-ctcctatgtttcag

upper sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0151g00860.t01 (Vitis vinifera), 5'ss of exon 7
GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATGgtaattgctttagtgggccaa--ataacttgctgt---ttattgggaattcttgttt-------tgacaaataatggtggcaaaagtgtgttttcttttgtc--ttcttccttgcag-----------
| ||||| ||||| || ||||||||||||| |||||| |||||||||||  |||||||||||| || ||     | ||  ||  || | |      ||| |  | |  || | |        ||   | ||  | || || | ||  |  | ||||     |   || ||||             
GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCTTGGATGgtaatttctgtatcaaactaatgatggctagataaaaactatagatagtctttatatattaatacgagtcaaaaaaggggaaagattgaataattttttaataatagatctttgctaatggttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407763|gb|EV277578.1|EV277578
EST:     GCTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATG                         AGTATGTCTCATCATTGGAGTCACTTATTGATGAACTGGCTGCTACTAAAG
genomic: GTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATGgtaattgctt ... ttccttgcagAGTATGTCTCATCATTGGAGTCACTTATTGATGAACTGGCTGCTACTAAAG
EST: gi|23053050|gb|BU577541.1|BU577541
EST:     GTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATG                         AGTATGTCTCATCATTGGAGTCACTTATTGATGAACTGGCTGCTACTAAAG
genomic: GTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATGgtaattgctt ... ttccttgcagAGTATGTCTCATCATTGGAGTCACTTATTGATGAACTGGCTGCTACTAAAG