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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTTGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtaattttttgtgttgaatggttttcttagtggactaaaaatccctttaagctataaaatatttggtccacttgaaaatttcaccaatgggaaacctgca...

Basic information

species Glycine max
transcript GLYMA03G22370.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22370.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G079452_T02 (Zea mays), 5'ss of exon 7
CCACTTGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtaattttttgtgttgaatggttttcttagtggactaaaaatccctttaagctataaaatatttggtccacttgaaaatttcaccaatgggaaacctgca--
  |  |||| | ||  | ||| |||  ||||| |||||||| ||||| ||||||||||| ||||||||| |  | |   ||   || |||    |    | | |  ||   |||     || | ||| |   | |  ||              | | |   ||| |  
GGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTTGAGACTGTTTCCAAGgtattgatct-cattctttgttttgtacaacacattcactattttttttttgcatgacatagtgttttctttttgtctgcaattttgtcgcatggctgtaag

upper sequence: GLYMA03G22370.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0333g00020.t01 (Vitis vinifera), 5'ss of exon 7
CCACTTGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgtaattttttgtgttgaatggttttcttagtggactaaaaatccctttaagctataaaatatttggtccacttgaaaatttcaccaatgggaaacctgca------
 ||  |||||| |||   ||  | ||||| |||||||||||||||||||||||||||||||||||||||     |  | |  | | | | | | | |  |  |    |  ||  | | | | || |     ||  ||||||   ||   ||||      |   | |      
TCAAGTGTAACAGGACGAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGgta--cactcatttccatttgctat-taattcaaagagtggttactgaatggtttcaagt--ccagttgacttgagg-ttgtgccaagaatggattggtatattgc