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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaactgtctcaatgtttcttcccatttcccactaatttacttttaagctaactaatgtgagtgcctgatggattgagcag

Basic information

species Glycine max
transcript GLYMA03G21690.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574028|gb|CX547003.1|CX547003
EST:     ACGATGAAGGAGAGCTG-TTGAATTTCAAAACTGATGAGG                         AGCAAGTAA-TGATNGGGCTTGACAGAGCTGTGTTGACTATG-AGAAAGGG
genomic: ACGATGAAGGAGAGCTGTTTGAA-TTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGAT-GGGCTTGACAGAGCTGTGTTGACTATGAAG-AAGGG
EST: gi|193717457|gb|FK652855.1|FK652855
EST:     GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
EST: gi|192332848|gb|FK026849.1|FK026849
EST:     AAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: AAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
EST: gi|207764297|gb|GD735326.1|GD735326
EST:     AAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: AAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
EST: gi|193311683|gb|FK278127.1|FK278127
EST:     GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaactgtctcaatgtttcttcccatttcccactaatttacttttaagctaactaatgtgagtgcctgatggattgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT