Sequence
atgc intronic sequence ATGC exonic sequenceATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGgtgagtcgtacttctatcttttttattttcacatgtgtgcataaatttctatatggacacaattaaatttattgcattttttttggaattcag
Basic information
species | Glycine max |
transcript | GLYMA03G21610.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G21610.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 5'ss of exon 7
ATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGgtgagtcgtacttctatcttttttattttcacatgtgtgcataaatttctatatggacacaattaaatttat-tgcattttttttggaattcag----------
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ATTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGCATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGgtaagtgatttctct-ttgatattgccttcgcattcatgcatgaaagtatgtg-gtataaggtgatatcgacgtataccttattattggctctgactgcaacag
upper sequence: GLYMA03G21610.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 7
ATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGgtgagtcgtacttctatcttttttatttt----cacatgtgtgcataaatttctatatggacacaattaaatttattgcattttttttggaattcag------------------------------------------------------------------------------------------------
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ATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGGCTAGAGAAGTATCATCTATGCCTCCTTATACTGACTATGTGTCCACACGGTGgtgagtcttctattaaatttttctgtgtatgggcacatgtgtgtgcgtgtttgt-tgggtactgaagtgaatttaacac-tcttggttgaatttttgtgtgtgtaggcccatgtgtgtggcttgtgtgtttgttgggtgatgaagtcaatgtaacactcacatcttatgttttgattgcaatatttgtgcaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6502102|gb|AW203475.1|AW203475EST: AGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTG GTATCGAGCTCCAGAAGTTTTGTTGCGAGCCCCTTGTTATACTCCTGCTGT
genomic: AGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGgtgagtcgta ... tggaattcagGTATCGAGCTCCAGAAGTTTTGTTGCGAGCCCCTTGTTATACTCCTGCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGgtgagtcgtacttctatcttttttattttcacatgtgtgcataaatttctatatggacacaattaaatttattgcattttttttggaattcag
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