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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAATAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgctttgtgactttatttagatccccattgtcatatttttgacactgttcatgtctcacattcttggttattttttag

Basic information

species Glycine max
transcript GLYMA03G07420.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07420.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 8
CATAATAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgct-----ttgtgactttat-ttagatccccattgtcata-----tttttgacactgttcatgtctcacattcttggttattttttag-
        ||||||||||||||| || |||||| ||||| |||||||||||||||| ||||| ||  |||| || || |||||||| ||||| |||||||||||    | ||       |  | ||||| |  || ||||    ||| ||      ||  ||    ||     |      | | |     |   |  |  
--------GGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTGgtaagccttgtgtaaataatattaactttgtactaaatccatgatgtaatccagacttgctggatgtgcatccgcactgtactgtcaaagaggctgcatt

upper sequence: GLYMA03G07420.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
CATAATAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgctttgtga-ctttattt-------agatccccattgtcatatttttgacactgttcatgtctcacattcttggttattttttag----------------------------------------
        |||||||||||||||  | |||||  ||||| |||||||||||||||||||||| ||  | ||||| || |||||||| ||||||||||||||||| | |    |||    | |||| ||        ||| || || ||  ||     |   | ||  ||    | |  || |||| |||| | ||                                         
--------GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatc-tagtgcacacaa-ttatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208090206|gb|GD890043.1|GD890043
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATACCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193312907|gb|FK282348.1|FK282348
EST:     TGAATCAATAGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGAATC-AT-GAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|208072405|gb|GD869749.1|GD869749
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|207846779|gb|GD818662.1|GD818662
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193688947|gb|FK632222.1|FK632222
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193345470|gb|FK309227.1|FK309227
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|208290745|gb|GE087639.1|GE087639
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|207711257|gb|GD694714.1|GD694714
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193425538|gb|FK387887.1|FK387887
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|207717011|gb|GD699549.1|GD699549
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193702641|gb|FK639157.1|FK639157
EST:     GTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAAGCCTG                         GTGATTATGTCGCACATNTCAAATTCACTGTCTTGCTAATGCCCAATGGA
genomic: GTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATG-AAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGA
EST: gi|193559782|gb|FK515029.1|FK515029
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193325874|gb|FK290313.1|FK290313
EST:     CATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: CATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|208285814|gb|GE085172.1|GE085172
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|207843709|gb|GD816540.1|GD816540
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|208176210|gb|GD973895.1|GD973895
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|193698476|gb|FK634927.1|FK634927
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|208278916|gb|GE080459.1|GE080459
EST:     TGTGAATCATGGGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|18039999|gb|BM308293.1|BM308293
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
EST: gi|208201126|gb|GD999577.1|GD999577
EST:     TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT
genomic: TGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tattttttagGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGAT