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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAGgtgagcttcatacttatttgtttgctttgtttcccttttagtgccttactttcttgtcatcatcatttcagcttgatagactactttaagcatctgatctgtttttccaatgtatgttacag

Basic information

species Glycine max
transcript GLYMA03G02080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G02080.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0048g01140.t01 (Vitis vinifera), 5'ss of exon 7
GCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAGgtgagcttcatacttatttgtttgctttgtttcccttttagtgccttactttcttgtcatcatcatttcagcttgatagactactttaagca-------tctgatctgtttttccaatgtatgttacag-------------------------------------------------------------------------
||||||||||||||||||  |||| || ||||||||| | ||| | || |||||||||||||||| ||||   |  |  |    || |    ||| ||| |  |   |||   | ||   ||   || || |  ||||   | |  || ||  |       ||| ||||  ||||| | |  || ||                                                                             
GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttacaatattctatactgttgaagttctcttgtgat--tttatcatgtt--tatttccagtt-aatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712431|gb|BW671283.1|BW671283
EST:     AAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAG                         CAAAGCTTGTTGAGCTTATAATTGGAGCTCAAACACGATACACTTACATGT
genomic: AAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAGgtgagcttca ... tatgttacagCAAAGCTTGTTGAGCTTATAATTGGAGCTCAAACACGATACACTTACATGT