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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcattcttatcatccggtaaagaatatgggtgcaggttaacttggtcaacctgacaggttgattcagatggtttatgagttcagtttgggtccta...

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcattcttatcatccggtaaagaatatgggtgcaggttaacttggtcaacctgacaggttgattcagatggtttatgagttcagtttgggtccta
||||| | ||| |||| ||||| || || ||||||||||||||||||||||| |||||||  || |||||||| || || || |||||||||    |  ||     ||||   | | |    |    ||   |   |   | | |    ||   ||||    ||  || ||   ||||  |     
GGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCATgtaagtg---cccat-----ggtagctactttaatcg----tttcttgaattctctttattaattatctcagccttttgctgtgt---gttttag-----

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcattcttatcatccggtaaagaatatgggtgcaggttaacttggtcaacctgacaggttgattcagatggtttatgagttcagtttgggtccta---
||||| | || ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || ||||| || || || ||||||||| ||| |   |||           | |   | |  | |  |    |  || ||| | | |||       |||| ||   |||| | ||  |  ||   
GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagt-attttagccataataagtttgttttccatacgagattgcagcttttacttgaaaaggtgaa------ggttgattctttcaatctgttttatacag

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 7
GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcatt-cttatcatccggtaaagaatatg-ggtgcaggttaacttggtcaacctgacaggttgattcagatggtttatgagttcagtttgggtccta
| ||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| ||||||||||| || || |||||||||  ||  || |   |  ||        |  |  |||   |   |  ||    | | | | ||| || || ||| ||  || |  || |   ||    
GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtacttgtttcttgcctagtggcattcttatgaagcatactttatctgttctgcagtcggattgcttgagttggattg-gaatcaaggtgtagttag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409998|gb|EV279806.1|EV279806
EST:     GCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT                         GCCCTCGATGTGATTCGTGGAAGAAATCTTCAGATGCTAACAGATTCTTGC
genomic: GCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcatt ... tttggtgcagGCCCTCGATGTGATTCGTGGAAGAAATCTTCAGATGCTAACAGATTCTTGC