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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttttttcttttaatctagcccatgcaattatttttgcatttgtcatgtgtcttatgcagttattcattcttgtcattatctttgcag

Basic information

species Glycine max
transcript GLYMA03G00470.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00470.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g41960.1 (Oryza sativa), 5'ss of exon 7
TGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttttttcttttaatctagcccatgcaattatttttgcatttgtcatgtgtctta--tgcagttattcattcttgtcattatctttgcag
|||||||||| ||||||||| | ||||||||||||||||||||||| ||    | | | ||   |    ||||  |||| |||||||||||| |||||| ||  |     |   ||||    | |    || |   |||    | ||  | |  |||  ||  ||  | |  | | | |  |  || | | || ||
TGAGGACTGGCAAAGTGATGCGCGACTTTAAAGGAAGTGCTGATGAATTCAGTGCCAGTGGAAATATCAGTGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaacacactggtttttgtatttgttattgaatgcattacctctttgttaagttgttgtacctgggggtgcttactatattttttgtgtctgaag

upper sequence: GLYMA03G00470.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174757_T01 (Zea mays), 5'ss of exon 7
TGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgt-atattttttttcttttaat--ctagcccatgcaattatttttgcatttgtcatgtgtcttatgcagttattcattcttgtcattatctttgcag
| |||||||| ||||||||| | |||||||| ||||| |||||||||||| |    || ||   |   || ||  |||| |||||||||||| |||||| || | |   |   |  | || |   || ||  ||||   |  ||| | |  ||  |      |      ||| |   | ||  |||  ||   |   
TAAGGACTGGGAAAGTGATGCGAGACTTTAAGGGAAGCGCTGATGATTTTACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcataagtgctgtatttgttaaccgctgcataaacgttttcttaagttgttccagctggatgcttactatatttttacatgttcaaag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614289|gb|DB964949.1|DB964949
EST:     GAGTTTCATGGCCTGTTTTCAA                         ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
genomic: GAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
EST: gi|254329399|gb|GR838952.1|GR838952
EST:     GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAA                         ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
genomic: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
EST: gi|13240090|gb|BG359399.1|BG359399
EST:     GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAA                         ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
genomic: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
EST: gi|207807815|gb|GD778500.1|GD778500
EST:     GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAA                         ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
genomic: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT