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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTAGCATTTGTCAAAGCACTTTGTAAAGTTTCCATTTCAGAGTTACAGTCTCCAACAGACCCCCGTGTATTTGGCCTCACTAAAATAGTAGAAATTGCgtaagtttctttgtcctttttatgatagatgttctctttgtgcaattcattcagatttctgaagtaataattttcttgacatatggagctttcacagtga...

Basic information

species Glycine max
transcript GLYMA02G48200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G092586_T01 (Zea mays), 5'ss of exon 7
TAGTAGCATTTGTCAAAGCACTTTGTAAAGTTTCCATTTCAGAGTTACAGTCTCCAACAGACCCCCGTGTATTTGGCCTCACTAAAATAGTAGAAATTGCgtaag----tttctttgtcctttttatgata---gatgttctctttgtgcaatt-cattcagatttctgaagtaataattttcttgacatatggagctttcacagtga--
| || || ||||| || || ||||| || || || ||  | ||| | |||||||||||||| || ||| | ||  |||| |||||||||||||| ||||||||||    || ||   |    ||||  | |   ||| ||  ||    ||||   ||  || |  |      |  |     | ||  |||   || ||||    |||   
TTGTTGCTTTTGTGAAGGCTCTTTGCAAGGTCTCAATGACTGAGCTGCAGTCTCCAACAGATCCTCGTATCTTCTGCCTTACTAAAATAGTAGAGATTGCgtaagaagattcctaaatttaatttaaaaaatctgatatttactgatggcaacagcagccacaacttgatgtttctttggctattctcattccgaactttgtttgtgcag

upper sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
TAGTAGCATTTGTCAAAGCACTTTGTAAAGTTTCCATTTCAGAGTTACAGTCTCCAACAGACCCCCGTGTATTTGGCCTCACTAAAATAGTAGAAATTGCgtaagtttctttgtcctttttatgatagatgttctctttgtgcaattcattcagatttctgaagtaataattttcttgacatatggagctttcacagtga----
||||||| ||||| || || ||||| ||||||||||| |||||||| |||||||| || || || ||||||||  ||||||| ||||| || || |||||||||| || |    | ||||  |   ||    ||||| |     ||||      | ||   || |  | ||| | |  |   |  ||      |   | |    
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccag----tctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt