Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaagatttccaggtttcaaatttacagtgattttacttttccaatgtgctaattgaatcatgacacgtttcctag

Basic information

species Glycine max
transcript GLYMA02G46780.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 7
TCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaagatttccaggtttcaaatttacagtgattttacttt-tccaatgtgctaattga--atcatgacacgtttcctag----
|  ||||||| ||||| |||||||||||||| |||||||| ||||  ||    |||||||| ||||| ||| |||| ||||| || ||||| ||||||||||    |  | |||| ||         |||  |||||   |  ||  |||| |  | | |||    ||  | | | |||| ||      
TTCGAGAGGTGATGACTCCTCTTGTTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACTTTTGGGTGACCCATCAATACTCAAGgt---ctataaattttcacagcc----tttttagtgaccctttttcgtccattaggattattcgttatgctcaaatgttttcttcacag

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 7
TCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaagatttccaggtttcaaatttacagtgattttacttttc-caatgtgctaattgaatcatgacacgtttcctag
| ||||| || |||||||||||||| |||||||||||||||||||| ||| |||  || || || || ||| | |||||| | || ||||||||||| ||||||  | ||| |      | ||   || |    | || | | | ||  |         | |   | ||||      | | ||
TTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGgtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208194645|gb|GD988516.1|GD988516
EST:     TCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAG                         GGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGC
genomic: TCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaa ... cgtttcctagGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGC
EST: gi|208261699|gb|GE060488.1|GE060488
EST:     TCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAG                         GGTACCTGTTTT-GAGCAACGTGTTGATAATATAATGGGTATAGCATATGC
genomic: TCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaa ... cgtttcctagGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGC