ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaatctcgcttctgctttattttttttctgagtttg...

Basic information

species	Glycine max
transcript	GLYMA02G46450.2
intron #	7
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g20370.1 (Oryza sativa), 5'ss of exon 7

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtact-taaaatctcgct--------tctgctttattttttttctgagtttg-------------------------------------------------------------------------
                                                         |||||| |||||||| || ||  ||||||| ||||| ||||| ||||| | ||||||||| || |||||||||||||| ||||||||||||||||| ||||||   | | || | | |        ||     ||||   | | | | | |                                                                          
---------------------------------------------------------AGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgatattttgttgtagcaaatcaaaagtattacatcttttattctttcatgatttaagtgatattaccaaattattctgtttttaaatagcctatcatgaattgaaaatccttctgcag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g40840.1 (Oryza sativa), 5'ss of exon 7

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaa---tctcgcttctgctttattttttttctgagtttg-------------------------------------------
                                                         |||||||||||| ||  ||||| |||| || ||  |||| |||||||| |  |||||||||||||| |||||||| || ||||||||||| ||||  | |||| | ||||   |   |  | |   || ||  || | |||  |                                             
---------------------------------------------------------AGCAAAAGAAGAGGCACTAAGCAGAAAGGACATTCTGGAGAAGGTTGAAAGGTGGATGTCAGCATGCGAAGAAGAGAGCTGGCTTGAAGACTATAGCCAGgtaataaaaagtatacagtatgtaacttcttcattgtttgatctcattaacagtcatacatctttacattgatattctgataatggcag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G112337_T04 (Zea mays), 5'ss of exon 7

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaa---aatctcgcttctgctttattttttttctgagtttg--------------------------------------------------------------------------------------------------------------------------
                                                         |||||| || ||  | |||||| |||| || |||||||| | |||||| |  |||||||||||||||||||||||||| ||||||||||| || |  ||||||        | ||    || || ||| | | |  |   || |                                                                                                                            
---------------------------------------------------------AGCAAATGAGGAGTCCTTAAGCAGAAAGGACATATTGGAGAGGGTTGATAGGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgcttattcatttttgtgatttgtgtctcatggaagatgccaagccgtactttagctcctggcaattcttgaaattgcattattttttatatacttgctgttgtcttcacttcgtgtcctatcacaaggttctgacgtctatgctatcttaattaaccgcag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G465169_T01 (Zea mays), 5'ss of exon 7

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaatctcgcttctgc---tttattttttttctgagtttg------------------------------------------------------------------------------------
                                                         |||||| |||||||| || ||  ||||||||||  | || || || || | ||||||||| || |||||||||||||| ||||||||||||||||| ||||||    ||   | | ||| ||   |  |  ||  | |||  | |                                                                                     
---------------------------------------------------------AGCAAAGGAAGAAGCATTGAGTAGAAAAGATATCCTTGATAAAGTAGAAAGATGGATGTCTGCGTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtatggcaataattggttcggcaagtcaaagttactgctgcatgtatcctgtaaccatttatgcgataataccaacgcatagctggctgtggagtagcttttaaccacaaaactaaaataccttctgcag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G101874_T01 (Zea mays), 5'ss of exon 8

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaatctcgcttctgctttattttttttctgagtttg--------------------------------------------------------------------------------------
                                                         |||||| |||||||| || ||  ||||||| ||  | || || || || | ||||||||| || ||||||||||| || ||||||||||||||||| ||||||    ||   | | ||| ||         || |||  | ||                                                                                      
---------------------------------------------------------AGCAAAGGAAGAAGCATTGAGTAGAAAAGACATCCTTGATAAAGTAGAAAGATGGATGTCTGCGTGTGAAGAAGAGAGCTGGCTTGAAGATTATAACCGGgtatgacaataattggttcggcaagtcaaaattactgcttatgtatcctgtgatcatttgtgcgataataccaaagccatgctggctgtgcagcagcttttaaccacaaaattaaaataccttctgcag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G55230.2 (Arabidopsis thaliana), 5'ss of exon 6

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtact-taaaatctcgcttctgc-tttattttttttctgagtttg--------------------------------------------------------
                                                          || || |||||||| || ||  |||||||||||||||||   || ||||||||||||||||| ||||| ||||| || ||||| ||||| || ||||||||| |  | ||| || ||    |  | | | |  | |    |  |                                                        
---------------------------------------------------------GGCTAAGGAAGAAGCATTTAGTAGAAAAGATATATTGGACCGAGTCGAGAAATGGATGTCAGCTTGTGAGGAAGAGAGCTGGCTAGAAGACTACAATCGGgtaatgcataatttctctcagtcactcactatgatacatcataagacattaactttaaattggatcttgagctttttcatggttttgttttctgagagcag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G26760.1 (Arabidopsis thaliana), 5'ss of exon 7

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaatctcgcttctgctttat-----tttttttctgagtttg---------------------------------------------
                                                          || || || ||||| || ||  ||||||| || || |||   || ||||||||||||||||| ||||| ||||| || ||||| |||||||| ||||| |||    ||   | |||       ||      ||  ||  | ||  |                                              
---------------------------------------------------------GGCCAAGGAGGAAGCCTTTAGTAGAAAAGAAATTTTAGACCGTGTAGAGAAATGGATGTCAGCTTGTGAGGAAGAGAGCTGGCTCGAAGATTACAATCGAgtatgctaacattggctatgttaataaacacattacttattaagcatagagttcaattgatgattcttttgggtttttgttctggaaaaacag

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 6

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaatctcgct-tctgctttattttttttctgagtttg--------------------------------------------------------
                                                         |||||| ||||| ||||| ||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||       |||| || |||       |   |  |||  || |                                                        
---------------------------------------------------------AGCAAAGGAAGAGGCTTTCAGCAGAAAGGATATATTAGACAAGGTTGAGAAATGGATGTCAGCTTGTGAAGAAGAGAGTTGGCTTGAAGACTACAATCGGgtatcctctctctctctctctctccccctccctccctggattcgttgtggattagatccaccttgattaggaatgctcatttgtgctctctgcaatgttg

upper sequence: GLYMA02G46450.2 (Glycine max), 5'ss of exon 7
lower sequence: EFJ24960 (Selaginella moellendorffii), 5'ss of exon 7

TTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaatggatgtcagcatgtgaagaagaaagttggcttgaagattataatcgggtacttaaaatctcgcttctgctttattttttttctgagtttg-
                                                          || || |||||| |  |  |  || |||||||| |||| |   | ||   ||||||    ||||||||||||||||||||||||||||| || |||  |||| | |   |  ||||  | |  |  ||  |||  || | |  
---------------------------------------------------------GGCGAAGGAAGAATCACTCGGTAGACAAGATATAATGGAAAGAATGGAACGATGGATTAGTGCATGTGAAGAAGAAAGTTGGCTTGAAGAATACAATAAGgta-tgagcgttacgctatttcacttattcattttcgattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|192323992|gb|FK018683.1|FK018683

EST:     TAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAG                         GTTGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
genomic: TAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGgttgagaaat ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns