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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGCCAAGTTATATCCAAATTGCATGTTATTGAACTCGGTGCACAACCAGgtttgcatatttttagctcattcacatttatctctaatgtatctattttatgggcaacttatgttttgtagacaaatctgtcttgtatgctgatttagtt...

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 5
AATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGCCAAGTTATATCCAAATTGCATGTTATTGAACTCGGTGCACAACCAGgtttgcatat---ttttagctcattcacatttatctctaatgtatcta-ttttatgggcaacttatgttttgtagacaaatctgtcttgt-atgctgatttagtt-----------------------------------------------------------------
||||| ||||| ||     | |||| ||||||||||||||||  ||||||||| ||  | |  || || ||||||||||||||||| ||||| || ||||||||| ||||     | | |   |  |  ||  | | || | | |||| |  ||      |   || || | | ||      ||| || | |||  |  ||  ||                                                                 
AATGAGAACCCATCAACCCTTATTTGTTTTGCCTCAAAGACAACTAATGCTGGACAGATCACTTCAAAGTTGCATGTTATTGAACTGGGTGCCCAGCCAGgtttgtatataaaaatcaccaagtctattttgttttttattctttctagtgctacatttcaaacatcttgtattgatgtgcttgttttttcatgtgggcttcctttttcttttgaaagatgttgcaccatactgatatcaccatttttcttactgattgtttggttgtag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 7
AATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGCCAAGTTATATCCAAATTGCATGTTATTGAACTCGGTGCACAACCAGgtttgcatatttttagctcattcacatttatctctaatgtatctattttatgggcaacttatgttttgtagacaaatctgtcttgtatgctgatttagtt
||||| || |||||  || | || || |||||    ||||   |||||||||| ||  | | ||| ||  |||||||||||||||| ||||| |||||||||| || ||   |   ||  |  | |||| ||     | |   || ||  |      || |||||   || |       | ||| | | | |        
AATGAGAATCCTTCGATTCTTATATCATTTGCAAGCAAGAGCTTTAATGCTGGGCAGATAACATCAAAGCTGCATGTTATTGAACTTGGTGCCCAACCAGgttagcttaaact--actgctctatattt-tcatggttattgttagttggtattagtctgatgtt---taaaggtgggcggctttttttcag--------