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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAACTCTGCTGTGGGGGCTCTTCTGGTTACCTTCACCGTCTATGTCATCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtccaatctctgcatatatatctcatatttgtttgtttctacctagttatctttctcatctgagtagctttacttggtatccaagaatgaatt...

Basic information

species Glycine max
transcript GLYMA02G42290.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 8
TATTAACTCTGCTGTGGGGGCTCTTCTGGTTACCTTCACCGTCTATGTCATCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtccaatctctgcatatatatctcatatttgtttgtttctac-ctagttatctttctcatctgagtagctttacttggtatccaagaatgaatt-
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CATTAATTCAGCTGTGGGGGCTCTTTTGGTCAGCTTCACCGTCTACATCATCCCAGCTCTTGCCCATATGCTCACTTACAGAAAGGCCTCAGCCAGAAAGgtaaatggccctatcttttc-tccacctcttatcttcacttttactggcattatctattacccaca-ctcaccacgcttactttctggcccttaatgaccca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192347|gb|HO036429.1|HO036429
EST:     TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG                         AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
EST: gi|22540443|gb|BU090286.1|BU090286
EST:     TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG                         AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
EST: gi|151394389|gb|EV264260.1|EV264260
EST:     TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG                         AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
EST: gi|6666557|gb|AW278016.1|AW278016
EST:     TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG                         AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT