Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgactcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag

Basic information

species Glycine max
transcript GLYMA02G39390.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 6
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgactcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag
||  | ||||||||||| || ||||| |  || || ||||| |||||||| || |||||||||||||||||| | || ||||||||||||||||| |||||       |   |   ||  |||||  ||    | | |  || | |   |  |   || ||  ||  ||||    ||    || ||    |                    
GTTGGGTTGCCAGCTCGTGGTAAGACCTTTACAGCGGCTAAGCTTACAAGGTACCTTCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgcgcaatagcttaagctgtttctttata----tgattgctcatattcatggtattagccactaatcatgttttcttacgtttcaattgtag-------------------

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttct----cattcttgactcattcttct-tagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag
||  |  | |||||||| || || ||||  || |||||||| |||||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||||  || |      ||| ||| | ||| || |     |||      | ||| ||    ||| |    | | |||  ||   ||||  |  |||      |                 
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagt-gaacataactctcttttggttgaaactcggtgtgcag-------------

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgactcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag
||  |  | ||||||||||| ||||| |  || ||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||| |||||  |  |    ||| |   | | || | ||  |  | |     ||| | |  |       |  |  | ||  |  ||    | ||                          
GTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgataatttagcttaagctaattttgt-agagaaaattgcatgtgtgtatggtatcgctaatcatgtttgctattttgttttctag-------------------------

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgactcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatat-gtcaagtttgaatttaacaaaacttatgtttcaatgttgcag
||  | ||||| |||||||| |||||||  |||||||| ||  | ||||||||||| || ||||| || ||| |||| ||||| || |||||||| ||||||       || |||    ||  |||||  |  |   ||| ||| |  ||      |  |      | | |  ||| |||| |  ||||   ||   |||||  ||  |   
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttg--caatgattcttgattttttttag-cttat-cctgtcattacgcgacccttgttggaaagattgactcaaacattgctc-cgtttctttgcag---

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgac-tcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag
||  | |||||||||||||| || ||||  ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  ||   ||| || |  | |||| ||  ||    |  || ||    ||  ||  || ||      ||||| |   ||||  | |||||                       
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacag----ctctaatc----attgaagtgaggaagattgatatgac--ttttggttgtaacag----------------------

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S242_66V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgtt----------gttctcattcttgactcattcttcttagtaatca-gtagtcttgtatctaatggaaga---cagg---aaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag-------------------------------------------------
||  | ||||| || || || ||||||| |||||||||||| || ||  ||||| | |||||| |||||||| ||||||| ||||| ||||| || |||||           | |||   | || |     | |||  | |      ||  |  |   | |  | | | |    |||    | |||||   || |  | |   |||    |   ||  ||| ||  |                                                  
GTTGGGTTGCCGGCGCGTGGAAAGACTTTCACTGCAGCTAAGCTGACCCGATATTTGCGATGGCTAGGTCATGATACCAAGCACTTTAATGTCGGCAAGgtacgattcgagagatctgggtatttagctggtgttcacattctcagcgtgtttcttcttttggtagcataatttaggtctgactatgttgcgtgtccagtatccaagttcttccttcaaattttaaaattcttgcactacagtactttgacatcgcttgcacttttgacgtttacag

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgactcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag
||  |  | || |||||||| |||||||  || |||||||| || || ||||||||  | ||| | || ||| |||||||||||||||||||||| |||||     |  |       | | |   |   | ||  |||| | |    | |||     |  |||      ||||   |||  | ||        |    || | |       
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgtaagcttagtctgctcattagtagacagtgaaagtagtattttgagctttaactattgtgagggggacagtca---ttg--tctacttggttctggtgtttagt-------

upper sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgt-tgttctcatt---cttgactcattcttcttagtaatcag-tagtcttgtatctaatggaagacaggaaatat-gtcaagtttgaatttaacaaaacttatgtttcaa----tgttgcag-----------------------------------------------------------------------
||  | || || ||||| || ||||| | ||||||||||||||| || |||||| | || |||||||||||| | ||||| |||||||||||||| ||||| |||| | |     |||    |     |  |   ||||   |   ||| | |||  |    |       || | |  | | ||  ||||     | |  || | | |     | || |||                                                                       
GTTGGGTTACCGGCTCGTGGAAAGACATTCACTGCAGCTAAACTGACCAGATATTTGCGGTGGTTAGGTCATGACACCAAGCACTTCAATGTTGGCAAGgtatgtttttagaaaactttgtacgcagctggtgtcaatcttctcaacttatttcttgttttggttgcatgattttgggatgattatattttgtgtacccaatatctaaggtgctctttcaggttttagccttagagtgcacactttttgcagtggagtattttgatgcgattgtgcttttgatgtttcacag