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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCAACAGCAAAAAACCCCTCAATAGGTTCTGCTTGGCTTACTTTAGCTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctatttttagccatgtaaaaacattttttttttgttagaagtcttctgtctctaatataatattcatcttctttgttatcacag

Basic information

species Glycine max
transcript GLYMA02G38930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 6
CTTAGCAACAGCAAAAAACCCCTCAATAGGTTCTGCTTGGCTTACTTTAGCTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctatttttagcca--tgtaaaaacattttttttttgttagaagtcttctgtctctaatataatattcatctt----ctttgttatcacag
  || |  ||||||||| ||| | ||| |  ||||||||||||||| ||||  |||| || ||||| ||||||||||||||||||||||||||||||||||||   ||    |   |    | |    | |       |  ||||  | ||    || |  | ||| |||  ||||     |||||  |  |||
TCTAACTGCAGCAAAAAGCCCATTAATTGCATCTGCTTGGCTTACTCTAGCCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttca-ctttcttctaacatttttcttattcttttgtgtttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207777002|gb|GD747845.1|GD747845
EST:     CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAG                         GAGATTGCACCGCAGTATTCTGGTGTTTTACATG
genomic: CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctattt ... gttatcacagGAGATTGCACCGCAGTATTCTGGTGTTTTACATG
EST: gi|15814220|gb|BI786495.1|BI786495
EST:     CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAG                         GAGATTGCACCGCAGTATTCTGG
genomic: CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctattt ... gttatcacagGAGATTGCACCGCAGTATTCTGG