Sequence
atgc intronic sequence ATGC exonic sequenceACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatatttcttcttatcaaagaaaatcttttaagcagtcagactgtttctatttcagtcagtagagatta...
Basic information
species | Glycine max |
transcript | GLYMA02G38160.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
ACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatatttcttcttatcaaagaaaatcttttaagcagtcagactgtttctatttcagtcagtagagatta-------
|||||||| ||||||||||| || || ||||||||||| |||||||| ||||||||| |||| |||||||| | || ||||| || ||||| | | || |||| || | |||| | | | || | | | || || | ||| |||| || || | | |
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcatt---ttcctccccgttctagtttatagatacacatattaagcatggcgagcaat--aatttgttg--ttttttgcattttagccaaaaaaaagagaagggtt
upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
ACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggt-----accattgtattctgtgttgtggatatttcttcttatcaaagaaaatcttttaagca---gtcagactgtttcta--tttcagtcagtagagatta--------------------------------------------------------------
|||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||| |||||| ||||||||| || |||||||||||||| ||| || ||| || | | | ||| |||| | | | | || | | || | | | | ||| || | |||
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatccaatataccattgagatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag
upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatatttcttcttatcaa-----agaaaatcttttaagcagtcagactgtt-tctatttcagtcagtagagatta
|| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||| | ||||| ||||| || ||||||||||| | | | | | | | | | | ||| |||| | ||| |||| || | | | | | | | | | |||
ACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttacatctctctctctctctctctctctctctctctctatctatctatggaagttcttccaattgatgcaaatatggtatgctaccatttttag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5819930|gb|AI988197.1|AI988197EST: CAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAG TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCT
genomic: CAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggt ... atattcgcagTTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggtaccattgtattctgtgttgtggatatttcttcttatcaaagaaaatcttttaagcagtcagactgtttctatttcagtcagtagagatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA