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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaatttccccccctctttcccatctattagactactttattgttctactcaactcaagttaatatgtcatgtaaatttaggttgctgtggatt...

Basic information

species Glycine max
transcript GLYMA02G36960.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295491|gb|FG987105.1|FG987105
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         ---TAGCA-GAGAATCAAGTGGTTTTTCTTGGATCAATAATTCCTGATGCT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGA-TCAAGTGGTTTT-CTTGGATCAATAATTCCTGATGCT
EST: gi|58021429|gb|CX708170.1|CX708170
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCC-A-                         -AGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|207833730|gb|GD807171.1|GD807171
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         CAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|57575838|gb|CX548809.1|CX548809
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         ---TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCTTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|58025341|gb|CX712082.1|CX712082
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCC-A-                         -AGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|51338422|gb|CO982288.1|CO982288
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         CAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT