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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgttatttcctcttctaattgagggttatttccactctcaatttaaggcatttctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcag

Basic information

species Glycine max
transcript GLYMA02G35500.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35500.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G009876_T01 (Zea mays), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgttatttcctcttctaattgagggttatttccactctcaatttaaggcatttctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcag
 || ||||| ||||| || ||  |||||   |||||||||||||| ||||| || |||||||| ||||||||||| || || | |||||| || ||||||||||       ||||  |   |   ||  |   ||        | |  | ||    | |  |   | |  ||  ||  | |    ||  | ||   |   |||   |   || |       | ||  | |||   ||  |    ||||||
GAAGTGCACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCCAATGTACACTTCTCTTGGTGTTATGACAAGGGGAACGATCATTGAGgtatgccaagcatttttttaccattttatgtagta--------ccctgtgtagctgactagtaactatattagtttttcgtc---atggtttactgggattatctctttgtacccctcgaaaattgctgcttacaatggtcttctttcag

upper sequence: GLYMA02G35500.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174204_T01 (Zea mays), 5'ss of exon 7
TAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgttatttcctc------ttctaattgagggttatttccactctcaatttaaggcatt---tctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcag
 || ||||| ||||| || ||  |||||   |||||||||||||| ||||| || |||||||| ||||||||||| || || | |||||| || ||||||||| |      ||||   |      || || |  |   || | |  | |  |  | | |||   |     || ||| |  |  || ||  || ||||      |   |       ||  |||| ||||     |  | ||    ||| |    ||||||
GAAGTGCACTTTCAACCTTGACATAATTTCTGTGAAGAAAAACCCAAATGGTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaagcatttttaccagttattgtagtcaatacttttgtgtagtgactgtattaggtgctagccatggttcactgagattacctctt-tatatcaccccctcccctcccctc--tatcgaaat-----tgctgctcacaatagtattctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811431|gb|BQ295909.1|BQ295909
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
EST: gi|120491259|gb|EH219426.1|EH219426
EST:     GCCCTATGTACACCTCTCGTGGTGTCATTACCAAGGGGACTATAATTGAG                         GTGAATGTCAGTGAACTTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGG
EST: gi|192313774|gb|FK007646.1|FK007646
EST:     GCCCTATGTACACCTCTCTTGGTATCATTACCAAGGGA-CTATAATTGAG                         -TGAATGTCAGTGAACTTGGTCTTGTCACG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACG
EST: gi|22525744|gb|BU084555.1|BU084555
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
EST: gi|192313831|gb|FK007647.1|FK007647
EST:     GCCCTATGTACACCTCTCTTGGTATCATTACCAAGGGAACTATAATTGAG                         -TGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG