Sequence
atgc intronic sequence ATGC exonic sequenceAGTTCTGGACATATGTAGAAAAATCATTTACATGGACAGATCTTCCTTCTAAGTTTCCCACAAAATATGTCCAGTTTCCTgtaagtaacagtttatttttggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcag
Basic information
species | Glycine max |
transcript | GLYMA02G17110.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G17110.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g04270.1 (Oryza sativa), 5'ss of exon 8
AGTTCTGGACATATGTAGAAAAATCATTTACATGGACAGATCTTCCTTCTAAGTTTCCCACAAAATATGTCCAGTTTCCTgtaagtaacagtttatttttggtacatatcaatcatgaatattttctaatttcttatttc-taattctagca--atacctaatttcag----------
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AATTCTGGCCATATGTTGAGCAATCCTTTACATGGACTGACCTTCCATCAAAATTTCCAACAAAATATGTGCAATTTCCGgtatgcta-aatatcttttgatcatctttgaactattattttgcaagattttgttatttcatccatgtggcatcataccaatctttctctgcttccag
upper sequence: GLYMA02G17110.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G148924_T06 (Zea mays), 5'ss of exon 7
AGTTCTGGACATATGTAGAAAAATCATTTACATGGACAGATCTTCCTTCTAAGTTTCCCACAAAATATGTCCAGTTTCCTgtaagtaacagtttatttttggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaa--tacctaatttcag---------
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AATTTTGGCTATATGTTGACAAATCATATTCATGGACTGACCTTCCATCAAAGTTTCCAACAAAATATGTCCAGTTTCCAgtatgttttcacaattgtcttatatccattatcttgcaaagtcctgttggtgtctaatcctcatgccatcagactgacctgtttcttttgtttcag
upper sequence: GLYMA02G17110.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 7
AGTTCTGGACATATGTAGAAAAATCATTTACATGGACAGATCTTCCTTCTAAGTTTCCCACAAAATATGTCCAGTTTCCTgtaagtaacagtttatttt-tggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcag
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AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctat---ttgtctctgaggttacttttatt--attgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193436983|gb|FK399910.1|FK399910EST: CCCACAAAATATGTCCAGTTTCCT GTATACAATGCTTCAGTTCATTTAAATTATGTTGACTGTAATAGGTGGCTA
genomic: CCCACAAAATATGTCCAGTTTCCTgtaagtaaca ... ctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTCTGGACATATGTAGAAAAATCATTTACATGGACAGATCTTCCTTCTAAGTTTCCCACAAAATATGTCCAGTTTCCTgtaagtaacagtttatttttggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcag
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